Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02080 360 / 7e-129 ASAR1, ATSARA1C, ATSAR2 secretion-associated RAS super family 2 (.1) AT1G56330 357 / 2e-127 ATSAR1B, ATSAR1, SAR1, ATSARA1B ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS 1B, secretion-associated RAS 1B (.1) AT3G62560 356 / 3e-127 Ras-related small GTP-binding family protein (.1) AT1G09180 332 / 1e-117 ATSARA1A, ATSAR1 SECRETION-ASSOCIATED RAS 1, secretion-associated RAS super family 1 (.1) AT1G02620 184 / 1e-60 Ras-related small GTP-binding family protein (.1) AT2G24765 89 / 3e-22 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT3G49870 87 / 2e-21 ATARLA1C ADP-ribosylation factor-like A1C (.1) AT5G67560 82 / 9e-20 ATARLA1D ADP-ribosylation factor-like A1D (.1) AT2G47170 81 / 2e-19 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT3G62290 81 / 3e-19 ATARFA1E ADP-ribosylation factor A1E (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010926 [exp] 372 / 8e-134 AT4G02080 385 / 9e-139 secretion-associated RAS super family 2 (.1) Lus10037739 [exp] 357 / 8e-128 AT4G02080 389 / 2e-140 secretion-associated RAS super family 2 (.1) Lus10036456 [exp] 354 / 2e-126 AT4G02080 386 / 3e-139 secretion-associated RAS super family 2 (.1) Lus10016874 [exp] 351 / 4e-125 AT4G02080 383 / 7e-138 secretion-associated RAS super family 2 (.1) Lus10041127 [exp] 337 / 3e-119 AT4G02080 369 / 1e-131 secretion-associated RAS super family 2 (.1) Lus10002817 [exp] 82 / 2e-19 AT2G15310 273 / 1e-94 ADP-ribosylation factor B1A (.1) Lus10031436 [exp] 81 / 3e-19 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 81 / 8e-19 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 80 / 1e-18 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G019100 [exp] 356 / 3e-127 AT4G02080 357 / 1e-127 secretion-associated RAS super family 2 (.1) Potri.010G141900 [exp] 355 / 4e-127 AT4G02080 384 / 3e-138 secretion-associated RAS super family 2 (.1) Potri.013G009900 [exp] 354 / 2e-126 AT4G02080 308 / 3e-108 secretion-associated RAS super family 2 (.1) Potri.013G010000 [exp] 352 / 1e-125 AT4G02080 308 / 3e-108 secretion-associated RAS super family 2 (.1) Potri.008G107800 [exp] 350 / 3e-125 AT4G02080 338 / 4e-120 secretion-associated RAS super family 2 (.1) Potri.005G015400 [exp] 343 / 4e-122 AT4G02080 299 / 7e-105 secretion-associated RAS super family 2 (.1) Potri.006G171500 [exp] 88 / 7e-22 AT2G24765 353 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G267800 [exp] 87 / 1e-21 AT2G24765 333 / 8e-119 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G096077 [exp] 87 / 1e-21 AT2G24765 354 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G013700 [exp] 87 / 1e-21 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10031408 pacid=23155804 polypeptide=Lus10031408 locus=Lus10031408.g ID=Lus10031408.BGIv1.0 annot-version=v1.0 ATGTTTCTGATCGATTGGTTCTACGGAGTTCTCGCATCGCTCGGTCTGTGGCAGAAGGAAGCCAAGATCTTGTTCCTCGGCCTCGATAATGCCGGGAAAA CCACTCTTCTCCACATGTTGAAAGATGAGAGGCTAGTGCAGCATCAGCCGACTCAGTACCCGACTTCTGAAGAGCTGAGCATTGGGAAAATCAAGTTCAA GGCTTTTGATCTTGGTGGTCACCAGATTGCTCGTAGAGTCTGGAAAGATTACTATGCTAAGGTGGATGCTGTGGTATATTTGGTGGATGCATTCGACAAG GAAAGATTCGCAGAGTCCAAGAAAGAACTCGACGCACTCCTCTCCGACGAGTCACTCTCCACTGTCCCTTTCCTGATACTCGGGAACAAGATCGACATAC CATATGCTGCCTCGGAAGATGAGCTTCGTTACCACTTGGGGCTCACAAACTTCACCACCGGCAAGGGCAAGGTGAATTTGAGTGACACGAATGTCCGCCC CCTCGAGGTGTTCATGTGCAGCATCGTCCGCAAAATGGGCTACGGGGAAGGGTTCAAGTGGATGTCTCAGTACATCAACTAG
AA sequence Show only first row Show all	>Lus10031408 pacid=23155804 polypeptide=Lus10031408 locus=Lus10031408.g ID=Lus10031408.BGIv1.0 annot-version=v1.0 MFLIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAFDK ERFAESKKELDALLSDESLSTVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLSDTNVRPLEVFMCSIVRKMGYGEGFKWMSQYIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10031408 [exp]	0	1
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Lus10010536 [exp]	2.0	0.9133
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Lus10002362 [exp]	2.6	0.9114
AT5G03460			unknown protein		Lus10023922 [exp]	3.2	0.9129
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10018812 [exp]	6.0	0.8945
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10015756 [exp]	6.3	0.8741
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10032710 [exp]	7.7	0.8908
AT4G27130			Translation initiation factor ...		Lus10027181 [exp]	8.1	0.9195
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10000928 [exp]	8.1	0.8844
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Lus10014292 [exp]	8.7	0.8869
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10009523 [exp]	10.4	0.9147

Compare expression of checked genes

Lus10031408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.