Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56340 590 / 0 AtCRT1a, CRT1 calreticulin 1a (.1.2) AT1G09210 573 / 0 AtCRT1b calreticulin 1b (.1) AT1G08450 429 / 2e-146 AtCRT3, PSL1, EBS2, CRT3 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) AT5G61790 192 / 4e-54 CNX1, ATCNX1 calnexin 1 (.1) AT5G07340 176 / 5e-48 Calreticulin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010924 [exp] 663 / 0 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10031410 [exp] 647 / 0 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10010923 [exp] 643 / 0 AT1G56340 616 / 0.0 calreticulin 1a (.1.2) Lus10020222 [exp] 434 / 3e-147 AT1G08450 586 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10026849 [exp] 432 / 4e-145 AT1G08450 590 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10043021 [exp] 196 / 3e-55 AT5G61790 793 / 0.0 calnexin 1 (.1) Lus10032521 [exp] 193 / 2e-54 AT5G61790 794 / 0.0 calnexin 1 (.1) Lus10010925 [exp] 139 / 2e-38 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G009500 [exp] 583 / 0 AT1G09210 579 / 0.0 calreticulin 1b (.1) Potri.005G015100 [exp] 571 / 0 AT1G56340 566 / 0.0 calreticulin 1a (.1.2) Potri.019G055200 [exp] 446 / 3e-153 AT1G08450 569 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.017G026300 [exp] 437 / 2e-149 AT1G08450 615 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.007G131500 [exp] 437 / 2e-149 AT1G08450 619 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.015G109200 [exp] 196 / 2e-55 AT5G61790 710 / 0.0 calnexin 1 (.1) Potri.012G111100 [exp] 180 / 1e-49 AT5G61790 677 / 0.0 calnexin 1 (.1) Potri.001G070600 [exp] 149 / 6e-39 AT5G61790 582 / 0.0 calnexin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00262 [flax] [poplar] Calreticulin Calreticulin family
Representative CDS sequence Show only first row Show all	>Lus10031409 pacid=23156042 polypeptide=Lus10031409 locus=Lus10031409.g ID=Lus10031409.BGIv1.0 annot-version=v1.0 ATGGCGAACCCTAATTCGCTCTGTCTGATTCTGTTCTCGCTCCTCGCAGTCGCCTCCGCCACTGTCTTCTTCGAAGAGAAGTTCGAAGATGGGTGGGGAA AACGATGGGTTAAATCTGATTGGAAGAAGGATGAGAACACGGCTGGAGAGTGGAATTACACCTCCGGAAAATGGAATGGAGACGCTGATGACAAGGGTAT CCAGACAAGTGAAGACTACAGATTCTATGCTATTTCAGCTGAGTACCCTGAACTCAGCAACAAGGACAAAACTCTGGTGTTCCAGTTCTCTGTCAAGCAT GAACAGAAGCTTGACTGCGGTGGTGGCTACATGAAGTTGCTCAGTGGTGATGTTGACCAGACCAAATTTGGCGGTGACACTCCATACAGCATTATGTTTG GACCTGATATCTGCGGATACAGTACCAAGAAGGTCCATGCCATCCTCACTTACAACGGAACAAACCACTTGATCAAGAAGGAAGTTCCTTGCGAGACTGA TCAGCTCTCCCATGTTTACACATTCATCATCCGTCCTGATGCTACTTACAGTATCCTTATTGACAACGTCGAGAAGCAAACCGGCAGCCTGTACACCGAC TGGAGCCTTCTCCCCCCAAAGAAAATCAAGGATCCTGAAGCGAAGAAGCCTGAGGATTGGGACGAAAAGGAGTACATTCCTGATCCTGAGGACATTAAGC CAGAGGGATATGATGACATCCCTGAGGAGATTCCAGACCCCGAAGCCAAGAAGCCTGAAGATTGGGATGATGAGGAGGATGGTGAATGGACTGCCCCAAC CATGCCCAACCCTGAGTACAAAGGTCCATGGACTGCAAAGAAAATCAAGAACCCCAACTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAATCCAGAA TTCAAAGACGACCCCGAAATCTACGTCTTCCCCAACCTAAAGTACGTCGGCATTGAGCTCTGGCAGGTGAAATCCGGTACCTTGTTTGACAATGTCTTGA TCTGCGACGATCCAGAATACGCCAAGAAGTTTGCCGAAGAAACATGGGCAAAGAACAAGGATGCTGAGAAGGCAGCATTCGACGAAGCTGAGAAGAAGAG AGAGGAGGAGGAATCCAAGAACGAACCTGCTGACACCGACGCCGACGATGATGATGATGAAGACGCAACTGAAGACGACGCTGAAGATGACTCGGAACTC AAAGGAGAGGAAGCCGATGATGAAGAAGTACATGATCAACAACATCCCCAAATCGCCTACGAAAACCATCATGCATTCGGCTACCTCTCCTTGTTCTGTT CTGCTTTCATCCTTCTCTTCAACGTCTTTGACGTCTTCCGCATGTGGGGGAACGAAGTTCCCCGGCCACTCTGGATTGCAACTTTAGCCATACCCCTTCA CTCCCTTCTCACATTTTGCTCCGGGGAACGCCTGTTTGATTACGTACTTCGATACTGGTTTGGGGAAGCTATTGCTCACAGCGTTGGCATAGGCTACATG GTTTACCTGAGCTGGTGGGTTCGTGTTGGCCAAATCAACTACGAGTACCTCTTTGTGGTCTGCCTGTACGGAGCCTCGGTTGCTCGGTTCCTCAGGGTCC CGTCCCGATCGGATATCTCAGCTCCCTGGAATGTCCTTTTCTGGCCTAAGTGCAGAAGAACTGCTGGAAATGCAGGGCTGCAGGGGAGGGTAAAGTTAAT GCCTGTGAAATTCAAGCCAAACAACACTCCTAGCTTCTCTCTACTTCCTTTCTGA
AA sequence Show only first row Show all	>Lus10031409 pacid=23156042 polypeptide=Lus10031409 locus=Lus10031409.g ID=Lus10031409.BGIv1.0 annot-version=v1.0 MANPNSLCLILFSLLAVASATVFFEEKFEDGWGKRWVKSDWKKDENTAGEWNYTSGKWNGDADDKGIQTSEDYRFYAISAEYPELSNKDKTLVFQFSVKH EQKLDCGGGYMKLLSGDVDQTKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNHLIKKEVPCETDQLSHVYTFIIRPDATYSILIDNVEKQTGSLYTD WSLLPPKKIKDPEAKKPEDWDEKEYIPDPEDIKPEGYDDIPEEIPDPEAKKPEDWDDEEDGEWTAPTMPNPEYKGPWTAKKIKNPNYKGKWKAPMIDNPE FKDDPEIYVFPNLKYVGIELWQVKSGTLFDNVLICDDPEYAKKFAEETWAKNKDAEKAAFDEAEKKREEEESKNEPADTDADDDDDEDATEDDAEDDSEL KGEEADDEEVHDQQHPQIAYENHHAFGYLSLFCSAFILLFNVFDVFRMWGNEVPRPLWIATLAIPLHSLLTFCSGERLFDYVLRYWFGEAIAHSVGIGYM VYLSWWVRVGQINYEYLFVVCLYGASVARFLRVPSRSDISAPWNVLFWPKCRRTAGNAGLQGRVKLMPVKFKPNNTPSFSLLPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10031409 [exp]	0	1
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002915 [exp]	2.2	0.8651
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10022517 [exp]	4.2	0.8554
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10043053 [exp]	4.5	0.8410
AT1G32860			Glycosyl hydrolase superfamily...		Lus10033244 [exp]	6.0	0.8492
AT5G43960			Nuclear transport factor 2 (NT...		Lus10022873 [exp]	9.2	0.8385
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10003873 [exp]	9.8	0.8413
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10029253 [exp]	10.6	0.8227
AT5G42660			Protein of unknown function (D...		Lus10016294 [exp]	12.5	0.7917
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10004650 [exp]	13.0	0.8321
AT5G65250			unknown protein		Lus10023151 [exp]	16.1	0.7983

Compare expression of checked genes

Lus10031409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.