Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56350 634 / 0 Peptide chain release factor 2 (.1) AT5G36170 244 / 9e-76 ATPRFB, HCF109 high chlorophyll fluorescent 109 (.1.2.3) AT2G47020 164 / 9e-46 Peptide chain release factor 1 (.1.2) AT3G62910 123 / 7e-31 APG3 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) AT3G57190 114 / 9e-28 PrfB3 peptide chain release factor 3, peptide chain release factor, putative (.1) AT1G33330 65 / 2e-11 Class I peptide chain release factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010922 [exp] 822 / 0 AT1G56350 646 / 0.0 Peptide chain release factor 2 (.1) Lus10036446 [exp] 253 / 5e-79 AT5G36170 651 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10041119 [exp] 245 / 7e-77 AT5G36170 627 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10009980 [exp] 163 / 3e-45 AT2G47020 603 / 0.0 Peptide chain release factor 1 (.1.2) Lus10038039 [exp] 162 / 1e-44 AT2G47020 600 / 0.0 Peptide chain release factor 1 (.1.2) Lus10005944 [exp] 125 / 2e-31 AT3G62910 644 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10029444 [exp] 119 / 2e-29 AT3G62910 632 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10008558 [exp] 59 / 2e-09 AT1G33330 267 / 2e-89 Class I peptide chain release factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G009200 [exp] 679 / 0 AT1G56350 676 / 0.0 Peptide chain release factor 2 (.1) Potri.008G075800 [exp] 248 / 4e-77 AT5G36170 671 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Potri.014G114000 [exp] 160 / 5e-44 AT2G47020 579 / 0.0 Peptide chain release factor 1 (.1.2) Potri.006G045200 [exp] 124 / 5e-31 AT3G57190 426 / 7e-148 peptide chain release factor 3, peptide chain release factor, putative (.1) Potri.014G133400 [exp] 122 / 1e-30 AT3G62910 549 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Potri.002G188200 [exp] 102 / 1e-23 AT2G47020 380 / 3e-130 Peptide chain release factor 1 (.1.2) Potri.019G063800 [exp] 64 / 2e-11 AT1G33330 211 / 3e-68 Class I peptide chain release factor (.1) Potri.010G181600 [exp] 48 / 2e-07 AT5G36170 88 / 2e-22 high chlorophyll fluorescent 109 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03462 [flax] [poplar] PCRF PCRF domain CL0337 [flax] [poplar] RF PF00472 [flax] [poplar] RF-1 RF-1 domain
Representative CDS sequence Show only first row Show all	>Lus10031411 pacid=23156018 polypeptide=Lus10031411 locus=Lus10031411.g ID=Lus10031411.BGIv1.0 annot-version=v1.0 ATGTCAGCTTTGATGCTCAGAAGATCAAGGAGCCTCCTTGCCGCAATCCTGAACAATAATACTATACGGAATAGCCACGAGGTTCTAGTTTCTCGGTTCC CTTCAATTCCGCACAAATCTCCAATCCGCGATCTTCTATTCCAGACGAAGGTTCTTCGCTGTTTTGGTTCACACGCTGCCGCTGAGGCTGCGGCTAAGGT AGTATCTACTTCCGACGGATTAACCGTTGATGGGATTGTTGATAGTAACTGGGCCATTCTCGACGAGTGTGAGAATGACTGGAAGAGCCATGCTGCTGCT ATTGCTCAGTCCATACAAGTGATCAAGAGGCGGTTGCAGTGGGAGAAATTGATGGTTAGGCTTGATGTGCTATCAGCACAGCTGAACAAGCCAGACCTAT GGGATGATCCTGTCCTTGCCGGAAGGATAAGTCGCGAGCACGGCTCTTTAATGGGGAAGATGAAGGAGGTGAAAGCATTGGAGAGGCAGCTCCTTGATCA CATTGATATGATAAAGCTTGCTCGCGAAGAGGAAGAAGACTCCGAGTTGGAATCGGAATCATTGAACGCCTTGCTTGATATGAGAAGGAAGTCTAGTGAG AAAGAGCTCGAAGCTTTGTTATCTGGGGAGCATGATTCTTGTCCATGTTACATTGAGGTTCAAGCCGGAGCTGGTGGGACCGAGAGCATGGACTGGGCGA AAATGGTGATGCAAATGTACAAGCAGTGGGCTCCACGACGCGGGTTTAAAGTAACAACAGTCGACGAGATGGCTGGTGAGATTGCAGGAATCAAGCGGGC AACGATCAGGCTGGATGGAGAATACGCATTTGGCTACGCGAAAGCAGAAGTAGGAGTGCACAGGTTGGTACGAATCTCGCCTTTCGACAGCGGGAAGAGA CGGCACACTTCCTTTGCAGCAGTTGCTGTGATTCCGATTCTCGGAGACAGATTCACACACGTCCAGATCAATGAATCCGACCTTCGAATTGAACGGTTTC GTGCAGGGGGAGCTGGAGGGCAGCACGTGAACACGACCGAGAGTGCTGTGAGGATCGTTCACATCCCCACAGGAGTCACTGCTACATGCCAAAACGAAAG ATCACAGCATATGAACAAGGCCTCAGCAATGTCGGTGCTGCAATCTCGACTCGACCAGCTGGAGATGGCGCGCCAGGCTCAAGCAAACTCTCAGCATACG CAGTCACTGACCGATATAAGTTGGGGGAACCAAATTCGGACCTATGTACTCCATCCTTACCGTATGGTGAAGGATCTTCGAACTGGGTACGAGGTTTTCG ACCCGGATTCGGTGCTTGAGGGAGAGCTAGATGGCTTCATCTTGAGCTACTTGTCAGCTTCCTTGGACAAGGATGAAGATGACGAACACCAATAA
AA sequence Show only first row Show all	>Lus10031411 pacid=23156018 polypeptide=Lus10031411 locus=Lus10031411.g ID=Lus10031411.BGIv1.0 annot-version=v1.0 MSALMLRRSRSLLAAILNNNTIRNSHEVLVSRFPSIPHKSPIRDLLFQTKVLRCFGSHAAAEAAAKVVSTSDGLTVDGIVDSNWAILDECENDWKSHAAA IAQSIQVIKRRLQWEKLMVRLDVLSAQLNKPDLWDDPVLAGRISREHGSLMGKMKEVKALERQLLDHIDMIKLAREEEEDSELESESLNALLDMRRKSSE KELEALLSGEHDSCPCYIEVQAGAGGTESMDWAKMVMQMYKQWAPRRGFKVTTVDEMAGEIAGIKRATIRLDGEYAFGYAKAEVGVHRLVRISPFDSGKR RHTSFAAVAVIPILGDRFTHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHMNKASAMSVLQSRLDQLEMARQAQANSQHT QSLTDISWGNQIRTYVLHPYRMVKDLRTGYEVFDPDSVLEGELDGFILSYLSASLDKDEDDEHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56350			Peptide chain release factor 2...		Lus10031411 [exp]	0	1
AT1G04945			HIT-type Zinc finger family pr...		Lus10026116 [exp]	2.8	0.8361
AT1G08610			Pentatricopeptide repeat (PPR)...		Lus10042567 [exp]	15.7	0.8223
AT5G41920	GRAS		GRAS family transcription fact...		Lus10010462 [exp]	19.4	0.7955
AT5G10630			Translation elongation factor ...		Lus10026953 [exp]	28.5	0.7667
AT3G25680			unknown protein		Lus10035054 [exp]	30.8	0.7862
AT3G20240			Mitochondrial substrate carrie...		Lus10033351 [exp]	39.1	0.7852
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10002672 [exp]	40.3	0.7924
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10018659 [exp]	41.0	0.7910
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Lus10006518 [exp]	46.2	0.7836
AT1G60640			unknown protein		Lus10033578 [exp]	48.1	0.7895

Compare expression of checked genes

Lus10031411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.