Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029517 [exp] 58 / 5e-10 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10032284 [exp] 46 / 6e-06 AT3G11220 436 / 9e-152 ELONGATA 1, Paxneb protein-related (.1.2) Lus10010920 [exp] 0 / 1 AT2G24100 184 / 8e-54 ALTERED SEED GERMINATION 1, unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031413 pacid=23155892 polypeptide=Lus10031413 locus=Lus10031413.g ID=Lus10031413.BGIv1.0 annot-version=v1.0 ATGCAGGCGTTAATCGTCAAGGTAATACCGGACTTGGTTGCATTATCCGTGATTGGCAGGGGAAGGTTGTTCTTGCTATTTCTAAGTGTGAAGAGGTTCG ATGGCCGACAGGAAATTGCAGAAGGAAGGGCTTTAATTCCTGGGCTTCGACAGGCTGTGGATAGAAGGATCGAACCCCTGATTGTTGAATCCGACTGCAA GAAGATTATCGACTCCTTAAGGAAGAAGGATGTTTACAGGTCGGAGCTAGGTAGTATCCTGGAGGACATCTATGAGCTGGAGATGATGACGGAGCGATTG AAAGCTTTGGAGAGTATGGGAGCGTCCAAACAGGATATTGACACGGAGTTCTATGATAGACAGCAGCATCAACAGCAAGTTTTTGTACCGAATCATACTG ATGCGGAACTCTATCAGCAGCAACATCATCCAGGGAGGTTTGGTATCCTTATCCTGATGGGGTTTTCAATCAAGGAATGGAGCATTTCGGTCGGCATCCA TGACAATGGAGATGGTATAGATGATGAGACATTAGGAACAGGGTTTTGTTAA
AA sequence Show only first row Show all	>Lus10031413 pacid=23155892 polypeptide=Lus10031413 locus=Lus10031413.g ID=Lus10031413.BGIv1.0 annot-version=v1.0 MQALIVKVIPDLVALSVIGRGRLFLLFLSVKRFDGRQEIAEGRALIPGLRQAVDRRIEPLIVESDCKKIIDSLRKKDVYRSELGSILEDIYELEMMTERL KALESMGASKQDIDTEFYDRQQHQQQVFVPNHTDAELYQQQHHPGRFGILILMGFSIKEWSISVGIHDNGDGIDDETLGTGFC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10031413 [exp]	0	1
					Lus10020204 [exp]	4.9	0.6874
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10042097 [exp]	12.2	0.6977
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10042079 [exp]	15.3	0.6936
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10032903 [exp]	15.8	0.7075
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Lus10022314 [exp]	28.5	0.6577
AT1G29010			unknown protein		Lus10015398 [exp]	31.4	0.6963
AT1G72940			Toll-Interleukin-Resistance (T...		Lus10009500 [exp]	38.4	0.6578
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10025536 [exp]	42.4	0.6206
					Lus10036397 [exp]	54.6	0.6881
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10016256 [exp]	56.7	0.6129

Compare expression of checked genes

Lus10031413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.