Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56423 226 / 1e-74 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010918 [exp] 342 / 5e-121 AT1G56423 286 / 2e-98 unknown protein Lus10020695 [exp] 271 / 2e-92 AT1G56423 306 / 3e-105 unknown protein Lus10029844 [exp] 270 / 5e-92 AT1G56423 310 / 9e-107 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008700 [exp] 260 / 2e-88 AT1G56423 283 / 1e-96 unknown protein Potri.005G017400 [exp] 248 / 3e-83 AT1G56423 297 / 9e-102 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031415 pacid=23155796 polypeptide=Lus10031415 locus=Lus10031415.g ID=Lus10031415.BGIv1.0 annot-version=v1.0 ATGGATTTCCAGAAGAGACGAGTTCAACTCCTTTCCTTCATCGTCGCCGTCATCTCTCTCAGCATCGCCGCTGAAAAATGCAGGGAGATGATGGGAGAGG ACTCATCATCCCAGAGCGGAAAATTCTCGATCTTCTACTGCTTCGACATGAGCACCGGAACCCTAGCCTGCACGGCCACCCAAGCAGCGAAGCTATACGT CTACAACTTAAGATCCTCCCACGTCGAAAGGGCGAGGAACGCAGCGATCGAGAGTGCCATCCACGACGCAATGCAGCAAGGGATATCACCCAAGGATGTG GCAAAGCAAGCACAGAGAGAAGGCGCCAAGGCAGCCAAGCTCGCCACGAGAAAGACCAGGCGGATCGTGGGTCCCATCGTGTCGTCCGGGTGGGACTTCT TCGAAGCGGTGTACTATGGTGGGACGGTGACGGAAGGGTTCTTGAGAGGGAGTGGGAGCTTGTTTGGTGCTTATGGAGGTGGGTTCTTGGGTGAGGAAAG GCTTGGGAGAGTTGGTTATTTGGTTGGGAGTCAGTTGGGGAGTTGGGTTGGCGGTCGGGTCGGGTTGATGGTTTATGATGTGATGAATGGGGTTGGTTAT TTGGTTAATGGGTATGAAAGGCCAGAGTCAGAAGAATCAGAATAA
AA sequence Show only first row Show all	>Lus10031415 pacid=23155796 polypeptide=Lus10031415 locus=Lus10031415.g ID=Lus10031415.BGIv1.0 annot-version=v1.0 MDFQKRRVQLLSFIVAVISLSIAAEKCREMMGEDSSSQSGKFSIFYCFDMSTGTLACTATQAAKLYVYNLRSSHVERARNAAIESAIHDAMQQGISPKDV AKQAQREGAKAAKLATRKTRRIVGPIVSSGWDFFEAVYYGGTVTEGFLRGSGSLFGAYGGGFLGEERLGRVGYLVGSQLGSWVGGRVGLMVYDVMNGVGY LVNGYERPESEESE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56423			unknown protein		Lus10031415 [exp]	0	1
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10042430 [exp]	2.0	0.9276
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017282 [exp]	4.0	0.9185
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10005610 [exp]	6.0	0.9116
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10021423 [exp]	7.7	0.8752
AT2G02970			GDA1/CD39 nucleoside phosphata...		Lus10012825 [exp]	8.8	0.8893
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10032963 [exp]	9.5	0.8707
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Lus10042847 [exp]	10.2	0.8722
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Lus10002109 [exp]	10.5	0.8809
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10028284 [exp]	14.7	0.8905
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Lus10008540 [exp]	15.1	0.8905

Compare expression of checked genes

Lus10031415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.