Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56430 318 / 2e-108 ATNAS4 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) AT1G09240 314 / 3e-107 ATNAS3 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1) AT5G56080 303 / 1e-102 ATNAS2 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, nicotianamine synthase 2 (.1) AT5G04950 300 / 1e-101 ATNAS1 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, nicotianamine synthase 1 (.1) AT4G26483 50 / 6e-08 nicotianamine synthases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010917 [exp] 520 / 0 AT1G56430 334 / 5e-115 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) Lus10029843 [exp] 347 / 8e-120 AT1G56430 364 / 2e-126 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) Lus10020696 [exp] 343 / 1e-118 AT1G56430 364 / 4e-126 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G014300 [exp] 345 / 3e-119 AT1G09240 405 / 8e-143 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1) Potri.010G143100 [exp] 290 / 2e-98 AT1G09240 362 / 2e-126 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1) Potri.004G193400 [exp] 265 / 3e-88 AT5G04950 280 / 6e-94 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, nicotianamine synthase 1 (.1) Potri.010G143133 [exp] 61 / 1e-11 AT1G56430 76 / 5e-17 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03059 [flax] [poplar] NAS Nicotianamine synthase protein
Representative CDS sequence Show only first row Show all	>Lus10031416 pacid=23155871 polypeptide=Lus10031416 locus=Lus10031416.g ID=Lus10031416.BGIv1.0 annot-version=v1.0 ATGGGTAGCATTTGCATGCAAGAGCATGACAAATTGGTGGCCAAAGTGTGCCAACTCTACAAGGAGATATCGAACCTCGAAACCCTCAAACCGTCTGAGG ATGTCAACTCTCTCTTCACCGAGCTCGTCCACACGTGCATGCCACCGAACCCTATTGATGTCAACACGGACCTCTTCCCAGAGGTCCAGGAGATACGGTC CAGGCTCATCGTGCTCTGTGGCCAGGCTGAGGGTTACCTGGAGAGTCACTACTCCGCAATCCTGGGATCCTATCCGAACCCACTTGACCATCTTGAGATG TTCCCTTACTACTCCAACTACCTCAAACTTAGCCTCCTTGAGTTCACCCTCCTCAAACAGAGCCACCCATCACTAAACCCTAAAAAAGTTGCATTTTTGG GGTCGGGCCCACTCCCGTTGACTTCCATAGTGTTGGCCACTAAACATTTGACGAACGCTACCTTCCACAACTACGACATTGACATTGAAGCCAACGAGTT GGCATCGGGGTTAGTGTCTTCTGACCGGGATTTGTGTGGTCGTATGGTGTTTCACACAAAGGACGTGATGGAGGTAACAGAGGAAGAGCTGGGGGAGTTT GATGTCGTGTTTTTGGCAGCGTTGGTGGGGATGGATAAGGAAGTGAAAGTAAAGGTCATAAGACACTTGGGGAAACACATGAGGGACGGGGCGGTTCTGA TGCTGAGGAGTGCTCATGGGGCTAGAGGGTTCCTTTACCCGGTCGTTAACAATCACGACCTTGATGTTCACGGGTTTGAGGTTGACTCGGTTTTCCACCC GACCAATGAGGTGATTAATTCGGTTGTTATTGCTCACAAACAAGGGAGGGGTGTCGTTGGGGCAGCAGCCATGGGTGCGTGA
AA sequence Show only first row Show all	>Lus10031416 pacid=23155871 polypeptide=Lus10031416 locus=Lus10031416.g ID=Lus10031416.BGIv1.0 annot-version=v1.0 MGSICMQEHDKLVAKVCQLYKEISNLETLKPSEDVNSLFTELVHTCMPPNPIDVNTDLFPEVQEIRSRLIVLCGQAEGYLESHYSAILGSYPNPLDHLEM FPYYSNYLKLSLLEFTLLKQSHPSLNPKKVAFLGSGPLPLTSIVLATKHLTNATFHNYDIDIEANELASGLVSSDRDLCGRMVFHTKDVMEVTEEELGEF DVVFLAALVGMDKEVKVKVIRHLGKHMRDGAVLMLRSAHGARGFLYPVVNNHDLDVHGFEVDSVFHPTNEVINSVVIAHKQGRGVVGAAAMGA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10031416 [exp]	0	1
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10025678 [exp]	2.0	0.9361
AT1G18200		AtRABA6b	RAB GTPase homolog A6B (.1)		Lus10018013 [exp]	5.9	0.9491
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10018160 [exp]	10.2	0.9309
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Lus10024958 [exp]	10.2	0.9240
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10010917 [exp]	11.7	0.8777
AT5G51490			Plant invertase/pectin methyle...		Lus10031720 [exp]	12.8	0.9108
AT1G21510			unknown protein		Lus10018955 [exp]	14.7	0.9263
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10002559 [exp]	17.9	0.9223
AT1G21510			unknown protein		Lus10028651 [exp]	22.3	0.9237
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10019707 [exp]	25.4	0.8890

Compare expression of checked genes

Lus10031416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.