Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25920 246 / 3e-83 RPL15 ribosomal protein L15 (.1) AT5G64670 54 / 4e-09 Ribosomal protein L18e/L15 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010916 [exp] 311 / 6e-109 AT3G25920 321 / 4e-111 ribosomal protein L15 (.1) Lus10032390 [exp] 45 / 7e-06 AT5G64670 385 / 9e-136 Ribosomal protein L18e/L15 superfamily protein (.1) Lus10023078 [exp] 39 / 0.0008 AT5G64670 369 / 3e-129 Ribosomal protein L18e/L15 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G121100 [exp] 243 / 4e-82 AT3G25920 310 / 1e-106 ribosomal protein L15 (.1) Potri.010G124301 [exp] 195 / 7e-63 AT3G25920 257 / 1e-85 ribosomal protein L15 (.1) Potri.016G002400 [exp] 51 / 4e-08 AT5G64670 315 / 1e-108 Ribosomal protein L18e/L15 superfamily protein (.1) Potri.001G324300 [exp] 48 / 5e-07 AT5G64670 323 / 1e-111 Ribosomal protein L18e/L15 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0588 [flax] [poplar] Ribos_L15p_L18e PF00828 [flax] [poplar] Ribosomal_L27A Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Representative CDS sequence Show only first row Show all	>Lus10031417 pacid=23155890 polypeptide=Lus10031417 locus=Lus10031417.g ID=Lus10031417.BGIv1.0 annot-version=v1.0 ATGAGAGGGCAGAAATCGAGGTCTGGACCTGGGATTATGAGAGGGTTTGAAGGTGGGCAGATGCCTCTTTACCGCCGTCTCCCCAAGTTGAAGGGTATTG CTGGAGGTATGAGTGCTGGTTTACCTAAGTACGTCCCAGTAAACTTGAAGGACATAGCTGAAGCTGGATTCGAAGAGGGTGATGAGGTTTCGTTGGAGAC CTTGAAAATGAAGGGCTTGATCAATCCATCTGGACGAGAACGGAAGCTTCCTCTCAAGATCCTAGGCGATGGGGAGATCAACTTGAAGCTGGACTTCAAA GCTCGAGCCTTTTCAGCATCTGCAAAGGAGAAGCTGGAAGCGGTTGGCTGCTCCGTCACTGTATTACCTGGCCGAAAGAAGTGGCTCAACGCAGCAGTCC TCAAGAACCTCGCCAGAGCTGACGAATATTTTGCCAAGAAACGAGCTGCTGCAGGAGAGGCCGGTTCGGAAGCTCAGCCTGCTTCTACTTGA
AA sequence Show only first row Show all	>Lus10031417 pacid=23155890 polypeptide=Lus10031417 locus=Lus10031417.g ID=Lus10031417.BGIv1.0 annot-version=v1.0 MRGQKSRSGPGIMRGFEGGQMPLYRRLPKLKGIAGGMSAGLPKYVPVNLKDIAEAGFEEGDEVSLETLKMKGLINPSGRERKLPLKILGDGEINLKLDFK ARAFSASAKEKLEAVGCSVTVLPGRKKWLNAAVLKNLARADEYFAKKRAAAGEAGSEAQPAST

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10031417 [exp]	0	1
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10043079 [exp]	1.4	0.9701
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10010145 [exp]	1.4	0.9629
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10041602 [exp]	2.2	0.9539
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10002394 [exp]	4.0	0.9495
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10000483 [exp]	4.6	0.9601
AT3G53700		MEE40	maternal effect embryo arrest ...		Lus10012328 [exp]	5.2	0.9489
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	5.3	0.9595
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10010916 [exp]	6.5	0.9517
AT3G12110		ACT11	actin-11 (.1)		Lus10001694 [exp]	7.4	0.9451
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10017446 [exp]	7.9	0.9090

Compare expression of checked genes

Lus10031417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.