Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56440 421 / 2e-144 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G17970 97 / 1e-21 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT5G09420 84 / 3e-17 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT2G42810 72 / 2e-13 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G12270 68 / 5e-12 Hop1 Hop1, stress-inducible protein, putative (.1) AT4G08320 68 / 5e-12 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G12400 67 / 1e-11 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G62740 66 / 2e-11 Hop2 Hop2, stress-inducible protein, putative (.1) AT2G42580 64 / 1e-10 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT3G17880 62 / 2e-10 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010915 [exp] 677 / 0 AT1G56440 412 / 2e-141 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10042001 [exp] 93 / 6e-20 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 92 / 1e-19 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009682 [exp] 92 / 2e-19 AT3G17970 700 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009050 [exp] 76 / 2e-14 AT3G17970 675 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018179 [exp] 69 / 2e-12 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10025656 [exp] 69 / 3e-12 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10022500 [exp] 67 / 1e-11 AT5G65160 652 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10028154 [exp] 67 / 2e-11 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008400 [exp] 471 / 3e-164 AT1G56440 471 / 1e-163 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G014100 [exp] 469 / 8e-164 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G038600 [exp] 95 / 1e-20 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.012G046900 [exp] 94 / 2e-20 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G205300 [exp] 81 / 3e-16 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.014G141800 [exp] 68 / 5e-12 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.005G166300 [exp] 68 / 5e-12 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.001G119500 [exp] 67 / 1e-11 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.001G392601 [exp] 64 / 8e-11 AT1G53300 260 / 1e-79 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.011G111500 [exp] 63 / 2e-10 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10031418 pacid=23156017 polypeptide=Lus10031418 locus=Lus10031418.g ID=Lus10031418.BGIv1.0 annot-version=v1.0 ATGAACTCATTTGGTTGCTGGGTTGCCAAGACGGAACTTCTGTTTGTTTCTGCGCTCACTGATTTCCAGGGGTTTCTGAATGACTTGCAGGATTGGGAGC TTAAGCTTAACGACAAGGACAAAAGGCTGAAGCCACTAGCTTCTGATAAGAAAGCTTCTGCTGCTGAATCTCTGAGGGGGAGCGGCTCGTTACTTCGTGA CTATGCAAGGAGCATTGGTTCAGTCAGCGATGAGAATACAGTGGATGCTACTTCAGAGAAAGAATTGGGGAATGAGTACTTCAAGCAGAAGAAATTTGTC GAAGCTATAGAGTGCTACTCTCGTAGCATAGCGTTTTCTCCTACAGCGGTAGCCTATGCGAATCGCGCAATGGCCTACATCAAAACCAAGAGATTTCAAG AGGCTGAGGATGATTGCACAGAGGCCTTGAATTTGGATGATCGCTACATAAAAGCTTACTCACGCAGAGCTACAGCTAGAAAAGAGTTAGGAAAGCTTAA GGAGTCCATGGAAGATTCTGAGTTTGCCTTGAGGTTGGAGCCTAACAATCAGGAAATCAAGAAACAGTACGATAACGCAAAGTCTTTGTACGAGAAGAAA CTCCAGAAGAAGGTATCAGGAGGATCTAAAAGCTCCTCACAACCAGTAGTAACACTCGGAAGGCCAGTTAAGGTTAATGGGGTTGGTGATGCATCTGTTT CAAGACCCTCCCAGACAACTGGATCAGCAGCAGCTGTTCAGAAAGATAAGACTAAGGAGAATGATGAAGCTGTCGGGGGCGAAGCCATCCTCATTAAGGA AATAGAGACCACAAGCTCAGTTACTGATAACCGAACAGAAAGACGGACTCGTCAAAAGAACGGAACACAAGAGCTTAAACCCTCTGTACACCATCTCGCG TCAAGAGCAGCTTATCGTGCCAAGACCGAAGCTGCAAAGAACATCACTCCGCCAACTTCGGCTTACCAATTCGAGGCTTCCTGGCGAAAGTTTTCTGGGG ACAGTTCATTGCAGACTTCCCTGCTAAAGGTTACACCTCCAAGTGCATTGCCCCGAATATTCAAGAACTCGTTATCTGTTCCTATACTAATCGGCATCAT CAAGTGTGTCTCCACTTTCTTCAAAGATGATGTGGATCTTGCTGTCAAATACCTGGAGAACTTGACCAAGGTCCCGAGGTTTAGCATGCTCGTCATGTCC CTTTCGACACCAGATAAGACCGATCTCCACAAGACTTGGAATGAAGTTTTCTGCAGCGAGGCAACTCCGGTTGAGTATGCAGCGATCCTCAATGGCCTGC GATCAGTTTACTGCATCAGATGA
AA sequence Show only first row Show all	>Lus10031418 pacid=23156017 polypeptide=Lus10031418 locus=Lus10031418.g ID=Lus10031418.BGIv1.0 annot-version=v1.0 MNSFGCWVAKTELLFVSALTDFQGFLNDLQDWELKLNDKDKRLKPLASDKKASAAESLRGSGSLLRDYARSIGSVSDENTVDATSEKELGNEYFKQKKFV EAIECYSRSIAFSPTAVAYANRAMAYIKTKRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESMEDSEFALRLEPNNQEIKKQYDNAKSLYEKK LQKKVSGGSKSSSQPVVTLGRPVKVNGVGDASVSRPSQTTGSAAAVQKDKTKENDEAVGGEAILIKEIETTSSVTDNRTERRTRQKNGTQELKPSVHHLA SRAAYRAKTEAAKNITPPTSAYQFEASWRKFSGDSSLQTSLLKVTPPSALPRIFKNSLSVPILIGIIKCVSTFFKDDVDLAVKYLENLTKVPRFSMLVMS LSTPDKTDLHKTWNEVFCSEATPVEYAAILNGLRSVYCIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56440		TPR5	tetratricopeptide repeat 5, Te...		Lus10031418 [exp]	0	1
AT5G14680			Adenine nucleotide alpha hydro...		Lus10014545 [exp]	19.9	0.7882
AT1G48170			unknown protein		Lus10011844 [exp]	58.9	0.7737
AT2G25280			unknown protein		Lus10001925 [exp]	71.7	0.7751
AT4G25680			PPPDE putative thiol peptidase...		Lus10014960 [exp]	135.0	0.7537
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Lus10039604 [exp]	170.0	0.7296
					Lus10012330 [exp]	173.8	0.7525
AT4G03240		ATFH, FH	frataxin homolog (.1)		Lus10039728 [exp]	184.9	0.7445
					Lus10014936 [exp]	186.5	0.7373
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10007794 [exp]	208.9	0.7356
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10038976 [exp]	210.0	0.7372

Compare expression of checked genes

Lus10031418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.