Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56460 262 / 3e-81 HIT zinc finger ;PAPA-1-like conserved region (.1.2) AT2G47350 206 / 5e-60 HIT zinc finger ;PAPA-1-like conserved region (.1.2) AT3G06660 196 / 7e-57 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010914 [exp] 785 / 0 AT1G56460 356 / 3e-117 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Lus10016899 [exp] 205 / 7e-60 AT3G06660 214 / 1e-64 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1) Lus10037760 [exp] 198 / 2e-57 AT1G56460 209 / 9e-63 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008300 [exp] 457 / 1e-155 AT2G47350 268 / 3e-83 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.005G014000 [exp] 455 / 1e-155 AT1G56460 250 / 1e-76 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.014G119600 [exp] 288 / 3e-90 AT2G47350 272 / 1e-84 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.002G195132 [exp] 277 / 3e-89 AT1G56460 236 / 5e-74 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.008G106200 [exp] 219 / 9e-66 AT3G06660 204 / 4e-61 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1) Potri.010G144000 [exp] 46 / 9e-06 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04795 [flax] [poplar] PAPA-1 PAPA-1-like conserved region CL0175 [flax] [poplar] TRASH PF04438 [flax] [poplar] zf-HIT HIT zinc finger
Representative CDS sequence Show only first row Show all	>Lus10031419 pacid=23155768 polypeptide=Lus10031419 locus=Lus10031419.g ID=Lus10031419.BGIv1.0 annot-version=v1.0 ATGGAGGGTTTCGGATTCAGCGATGCCAGCAGTGCGGTGAGGAAAAAGAGGAGCAGTACGTCTCGTCGTCCTCGCTCTGAATCGCATCCGCCTTCCGATC CATACGACGTTTCATCTTTATCTTCCACTCCTCCTTCAGACAATAATACGTTGAGAGGTGACGATGGAGGGTTTGTGAAATCTGATGAAGCTTCCAACAA CAGTGGTTCGTTTCGCGGAAGTAATAATGATCAGAGGCACAGTGTGGCTGACTCTCGGAGGTGTAGTGAAGGTGTCCTTGCACCGGCCAATTGGAAGAAC TCCGCTGCTGGGAACTTTGATGCTGCTGCTTCGGATGGAGGAGCTGCTAATAGTAACAAAGTTAAGAAGGTTAAGCTTAAAGTTGGCGGTGTAACTCGGA CCATCAATGCTAATTCTCCCTCTGACGATGCTTCTGCTGTTGGTCCTTCTTCGACGAAGTCTTCGCATTTTCCGGGCTCGGAGCATAAGCCTACAAAGGA CAACTTAGTCGACAACAATCGTTCGATCACTTCCGATAGAGCAAGCGGTCCACGAGGAGCATGGAAGGATCTGCCTAAAAGTGGCTCGAGTGGAAGGGGA TGTGGAGAAAACTCGAAGCAAAAGACGGTTACTGAAAATCGCTCCCCGAAACAAGCCGACAACTACGAGCCTGTCCGAAAGAGCAAACGCGTCCCCAAGA AACGTCTTCTGGACGACATGTTTGACGATGGAGTCGAGGATGGCAACAACGTTGTCAAGGCAAGTTACGGTATGGAGTTCGAAGACGAGGACGAGGCAGG GAGCAGAAAGCAGCGGAGGCTATCGAAAGTTATGAAAAAGAACGTTGTTCTGTACGACGTCGAGCCTCGAGGCTCATCAAGAACTGGTAAAGAAGGAGGT AAGAGGTCATCAACTACTAAGTCGGGGAAAGTGTCTGAAGACATTGACTATATTGAAGACCATGAGTTGGCATCGGACGACGAGCCTGGAACGAAGAATA AGAAGAAGGCGGCAAGGAGGGAGTTGGTAATCGAGTTACCTATCGAGTCAAAGGAGGAAATGACGGTTACGACTCGCCAGAGAGCTCTACAAACTGGCAA AGATGGCTCTTCTACTGATTTGGGTGGTATTGGTGCTATTGAGTTCCCCAATGGCCTCCCTCCCGCCCCTCCAAAAAAACAAAAGGAGAAGCTCACTGAA GTGGAGCAGCAACTAAAGAGAGCCGAGGCTCTCCAGAGACGTCGGTTACAAGTTGAGAAGGCTGCTAGGGAATCTGAGGCTGAGGCAATCAGAAAGATTC TCGGCCAGGATTCGAGCAGGAAGAAGCGTGAGGAGAAAGTCAAGAAGCGGCAGGAAGAGTTAGCACAGGAAAGAGCTGCAAACTTCATGACACTCGCTTC AGACCGTGTCAGGTGGGTCGATGGTCCGTCGGGAACAGTCGTAACATTCCCTGAAGAGATTGGCCTTCCCAGTATATTCCACTCCAAACCTCGAAGTTAC CCTCCACCGAGAGAGAAATGCGCTGGACCATCGTGTACGAATCCATATAAGTACAGAGACTCCAAGTCAAAGCTTCCACTTTGCAGCCTCCGGTGCTACA AGGCGATCCATGCCTGA
AA sequence Show only first row Show all	>Lus10031419 pacid=23155768 polypeptide=Lus10031419 locus=Lus10031419.g ID=Lus10031419.BGIv1.0 annot-version=v1.0 MEGFGFSDASSAVRKKRSSTSRRPRSESHPPSDPYDVSSLSSTPPSDNNTLRGDDGGFVKSDEASNNSGSFRGSNNDQRHSVADSRRCSEGVLAPANWKN SAAGNFDAAASDGGAANSNKVKKVKLKVGGVTRTINANSPSDDASAVGPSSTKSSHFPGSEHKPTKDNLVDNNRSITSDRASGPRGAWKDLPKSGSSGRG CGENSKQKTVTENRSPKQADNYEPVRKSKRVPKKRLLDDMFDDGVEDGNNVVKASYGMEFEDEDEAGSRKQRRLSKVMKKNVVLYDVEPRGSSRTGKEGG KRSSTTKSGKVSEDIDYIEDHELASDDEPGTKNKKKAARRELVIELPIESKEEMTVTTRQRALQTGKDGSSTDLGGIGAIEFPNGLPPAPPKKQKEKLTE VEQQLKRAEALQRRRLQVEKAARESEAEAIRKILGQDSSRKKREEKVKKRQEELAQERAANFMTLASDRVRWVDGPSGTVVTFPEEIGLPSIFHSKPRSY PPPREKCAGPSCTNPYKYRDSKSKLPLCSLRCYKAIHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10031419 [exp]	0	1
AT4G17250			unknown protein		Lus10004355 [exp]	2.6	0.8146
AT1G17820			Putative integral membrane pro...		Lus10018266 [exp]	3.5	0.8479
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10031560 [exp]	3.5	0.8380
AT2G01680			Ankyrin repeat family protein ...		Lus10034579 [exp]	7.5	0.8311
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10027840 [exp]	8.4	0.8119
AT4G03340			Core-2/I-branching beta-1,6-N-...		Lus10031626 [exp]	8.5	0.7934
AT5G22850			Eukaryotic aspartyl protease f...		Lus10021397 [exp]	10.4	0.8101
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10010914 [exp]	11.5	0.7839
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	12.8	0.8224
AT4G03260			Outer arm dynein light chain 1...		Lus10039729 [exp]	13.3	0.7646

Compare expression of checked genes

Lus10031419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.