Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18610 171 / 3e-46 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 169 / 2e-45 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G05420 137 / 3e-34 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 135 / 2e-33 ACBP5 acyl-CoA binding protein 5 (.1) AT2G36360 120 / 1e-28 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT5G04420 119 / 2e-28 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT5G18590 120 / 3e-28 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT4G04670 96 / 2e-20 Met-10+ like family protein / kelch repeat-containing protein (.1) AT5G48180 90 / 2e-19 NSP5 nitrile specifier protein 5 (.1) AT1G51550 86 / 9e-18 Kelch repeat-containing F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010913 [exp] 919 / 0 AT1G18610 177 / 1e-48 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017457 [exp] 139 / 4e-35 AT5G04420 610 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10028825 [exp] 138 / 6e-35 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10015176 [exp] 136 / 9e-34 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031497 [exp] 136 / 1e-33 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10029902 [exp] 130 / 1e-31 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10017860 [exp] 128 / 2e-31 AT1G18610 478 / 1e-164 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10038666 [exp] 127 / 4e-31 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10037933 [exp] 127 / 5e-31 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008200 [exp] 457 / 3e-154 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G013000 [exp] 454 / 6e-153 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 157 / 5e-41 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 154 / 3e-40 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G214900 [exp] 127 / 9e-31 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.013G018800 [exp] 127 / 2e-30 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.010G022000 [exp] 126 / 2e-30 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G026900 [exp] 126 / 2e-30 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G031200 [exp] 122 / 2e-29 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.010G230300 [exp] 120 / 8e-29 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10031420 pacid=23156028 polypeptide=Lus10031420 locus=Lus10031420.g ID=Lus10031420.BGIv1.0 annot-version=v1.0 ATGGAGAAGAACCAGCATCGGCAGCAAGCAATGTGGATGTACCCAAACCTTCATGGCTTCAACCCTTCTCAGAGATGGGGCCACTCAGCTTGCTATTCCC ATGGCTCCCTTTACATCTTTGGGGGGTGCTGTGGAGGGCAGCATTTGAGCGATGTTCAGATGCTGGACATGGCTACAATGTCGTGGACCACTTTAGAGAC CACTGGACCAAACCCAGGTCCAAGAGACAGCCACAGTGCTGTCATCCTAGGAACCCTGATGGTTGTCTTTGGTGGTAGTACCAACAATGGCTCGAAGAAA GTTAACGACCTTCATGTCCTGGACCTGCACACGAATCGATGGTTCGTCCCCGAGTGTAGAGGGAGCCCACCATCCCCACGTGAATCCCACACTGCAACAC TGATTGATGGTAGTAGCAAAATGGTGGTCTTTGGAGGGAGTGGTGAAGGGGAAGCTAACTACTTGAATGATGTCCATGTCTTGGACCTTAAGGACATGGC TTGGATTCCCCTCGGCAAAGACGATGTCAAGGGTGAGGTTCCGGTCCCTAGGGACAGCCATAGCGCTGTTGGGATCGATGGTCGTAGGATTCTGATCTTC GGTGGTGATCGTGGGGACCGGTACCATGGTGATGTTGATGTTCTTGACATGGACACTCTTACTTGGTCCAAGCTTTTCGTTGATGGATGCTCTCCTGGTG TTAGAGCAGGCCATGCTGCAGTTAGCATTGGAACGAAGGCAAGTTTGTCTGTTCTTGTGATAGGAGGGGTAGGAGACAAGCATTACTACAACGATGTTTG GATGCTCGACACGAGTTCATGTTTGTGGACAAGGCTCGATGTCGGTGGACATCAACCACAAGGGAGGTTCTCTCACACAGCTGTGGTTACTGACTCCAAC ATTGCCATCTATGGCGGGTGTGGAGAAGATGAGAGGCCACTCAATGAGCTACTGCTCTTGCACTTGAGTGTAGATCAAGCAAGTACTGGACTACCCTTCT GGATGAGATCAGGAGTAGGCACAATGAACCCTAAAAGGAAAAGGAGTAGCATGAACTCGAACAACGAGGCTGCGGCTACTGATCAAGAGGAGCATTCTCT TTCACTGTCTCAACATTCATCGTCCCCTTCACAATCGGACCAAGAACAGACTCCGATGAAGAAGCAAACTGGGGATTCTTGTCTTGCCAACTTGTTTCAG CAGCTGAATCCGCAGCCTCCAAAGATTCGGAGAGGAACTCCGTACAGTGCACAAATGGTGAGAGAGCAGCTTCTACAACACCACCACAAGGCAGTTCAGC AGCAGCAGCAGAGACCAACTGAGCAAAATTTGATTGGTGCTGAAGTACGAGGGAGAGTCGATGGATTGTTCGACTCGGGCTTACTAATGACAGCCAATGT GAATGGAAGGATACTAAGAGGAGTGTTATTCCCAGCTGCACCGATGGTCGGAATAGAAGGATCGCCGTTACCAAACCAGAACGAGTCATTCAACAGATTA CCATCATCAGCATTAGGATCGAGGAGCGAAAACCAGAACCGGAATCGGATGATGTTACTAAGTAAGCACAGTGAAGAGGCAATGGTGGCGTCCAGGGCGG CGAGTCGGGTGGTTAATAGAAGAGTAGGGTATTATGGAGCTGCAGAGAGTCGAGGGAGTAGCTCGAGATCGATGGCCGAATCGGGGACAATGCTGAAGAG GGATCATCTTGAAGGTGTGGTGCTGACATTGGGAGGACCAGGAACAAACTAG
AA sequence Show only first row Show all	>Lus10031420 pacid=23156028 polypeptide=Lus10031420 locus=Lus10031420.g ID=Lus10031420.BGIv1.0 annot-version=v1.0 MEKNQHRQQAMWMYPNLHGFNPSQRWGHSACYSHGSLYIFGGCCGGQHLSDVQMLDMATMSWTTLETTGPNPGPRDSHSAVILGTLMVVFGGSTNNGSKK VNDLHVLDLHTNRWFVPECRGSPPSPRESHTATLIDGSSKMVVFGGSGEGEANYLNDVHVLDLKDMAWIPLGKDDVKGEVPVPRDSHSAVGIDGRRILIF GGDRGDRYHGDVDVLDMDTLTWSKLFVDGCSPGVRAGHAAVSIGTKASLSVLVIGGVGDKHYYNDVWMLDTSSCLWTRLDVGGHQPQGRFSHTAVVTDSN IAIYGGCGEDERPLNELLLLHLSVDQASTGLPFWMRSGVGTMNPKRKRSSMNSNNEAAATDQEEHSLSLSQHSSSPSQSDQEQTPMKKQTGDSCLANLFQ QLNPQPPKIRRGTPYSAQMVREQLLQHHHKAVQQQQQRPTEQNLIGAEVRGRVDGLFDSGLLMTANVNGRILRGVLFPAAPMVGIEGSPLPNQNESFNRL PSSALGSRSENQNRNRMMLLSKHSEEAMVASRAASRVVNRRVGYYGAAESRGSSSRSMAESGTMLKRDHLEGVVLTLGGPGTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74150			Galactose oxidase/kelch repeat...		Lus10031420 [exp]	0	1
AT1G18610			Galactose oxidase/kelch repeat...		Lus10010913 [exp]	1.0	0.9261
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032217 [exp]	3.2	0.8931
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10023009 [exp]	6.0	0.8688
AT5G48500			unknown protein		Lus10009584 [exp]	6.5	0.8581
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035387 [exp]	6.6	0.8602
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020100 [exp]	7.5	0.8861
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10007774 [exp]	8.4	0.8684
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10031838 [exp]	9.7	0.8756
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10026828 [exp]	10.8	0.8268
					Lus10016958 [exp]	10.8	0.8806

Compare expression of checked genes

Lus10031420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.