Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26820 665 / 0 RTS3, MAR1, ATIREG3 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) AT5G26810 260 / 4e-79 Pectin lyase-like superfamily protein (.1) AT5G18990 248 / 3e-74 Pectin lyase-like superfamily protein (.1) AT2G47280 244 / 9e-73 Pectin lyase-like superfamily protein (.1) AT3G24130 232 / 2e-68 Pectin lyase-like superfamily protein (.1) AT2G19150 230 / 1e-67 Pectin lyase-like superfamily protein (.1) AT3G17060 217 / 5e-63 Pectin lyase-like superfamily protein (.1) AT5G19730 207 / 6e-59 Pectin lyase-like superfamily protein (.1) AT2G36710 199 / 1e-55 Pectin lyase-like superfamily protein (.1) AT1G05310 197 / 4e-55 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010912 [exp] 1540 / 0 AT5G26820 648 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10029841 [exp] 848 / 0 AT5G26820 673 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10020698 [exp] 835 / 0 AT5G26820 657 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10016678 [exp] 248 / 4e-74 AT3G24130 357 / 3e-123 Pectin lyase-like superfamily protein (.1) Lus10000935 [exp] 241 / 5e-71 AT3G24130 313 / 4e-105 Pectin lyase-like superfamily protein (.1) Lus10000936 [exp] 236 / 5e-70 AT3G24130 308 / 2e-104 Pectin lyase-like superfamily protein (.1) Lus10007136 [exp] 236 / 2e-69 AT3G24130 348 / 2e-119 Pectin lyase-like superfamily protein (.1) Lus10040541 [exp] 218 / 4e-63 AT3G17060 471 / 7e-168 Pectin lyase-like superfamily protein (.1) Lus10037774 [exp] 212 / 5e-61 AT3G17060 468 / 2e-166 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G012900 [exp] 763 / 0 AT5G26820 783 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Potri.005G012800 [exp] 343 / 6e-110 AT5G18990 281 / 1e-93 Pectin lyase-like superfamily protein (.1) Potri.004G033700 [exp] 338 / 1e-107 AT5G18990 298 / 8e-100 Pectin lyase-like superfamily protein (.1) Potri.013G008100 [exp] 323 / 5e-103 AT5G26810 256 / 3e-85 Pectin lyase-like superfamily protein (.1) Potri.017G054700 [exp] 242 / 5e-73 AT3G24130 378 / 2e-132 Pectin lyase-like superfamily protein (.1) Potri.008G104800 [exp] 221 / 2e-64 AT3G17060 477 / 5e-170 Pectin lyase-like superfamily protein (.1) Potri.018G068400 [exp] 219 / 4e-63 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 208 / 2e-59 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.004G156300 [exp] 206 / 4e-59 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.004G128820 [exp] 194 / 4e-55 AT3G29090 562 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06963 [flax] [poplar] FPN1 Ferroportin1 (FPN1) CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10031421 pacid=23155821 polypeptide=Lus10031421 locus=Lus10031421.g ID=Lus10031421.BGIv1.0 annot-version=v1.0 ATGCGGCGGCAAGCAGGGCTTCTGGGGCCCAACGAACTTCAGGCTAGTGGCCAAGTCGGGCGGCAATGGGGCCTTCTCGACGTTCTCTCCTCCACATCAC TCGCGGCCGCCGCACAAGAATGCGGCGGCAAGCCGGGCTTCTGGGGGCCGGCGAACTACAGGTTGGTGTCCAAGTACTCTGGCGGTGGTAGCGGGGCCTT CTCGACCGTACAAGCTGCCATTGATTCCGTCCCTTCCTATAACAGTCACTGGGTTAAAATTCATATCAAACCGGGCACCTATGTAGAACAGGTGACCATA CCGCAGACCAAACCGTGTATATTTCTAGAAGGGGAAGGGAGCGGCGCGACGATAATCGAGTATGGTGCGCATGCTCAGACCGACACAAGCTCGACTTTCT GCTCTTACCCTCCCAATATTGTAGCTAAGGGCATTACTTTTAAGAACACTCATAATTTATTGATGACGCTCCCGAAAAACTATAGCGAGTTAGGCGATCC TGCGGTGGTGCCTGCGTTGGCAGCCAGAATCTACGGCGACAAGTGTGCCTTCTACAATTGTAGGTTCATCGGGGTGCAGGACACGCTATGGGATACCAGA GGCCGCCATTACTATCTCAATTGTTACATCCGAGGCGCGGTCGATTTCATTTTCGGATCCGGCCAATCGTTCTACGAAAACACGCAAATATACGCAACGT CCGAAGGGTTCATAACAGCGCAACGTCGGAGTAGACGTGACGAGCCAAACGGGTTCGTGTTCTACGGCGGGCATATCGGCGGACCTACCGGAGTCCGGAC ATTCCTCGGCCGAGCTTACGGGCCTTTTTCCAGAGTCATCTTTCACTCAACTTACATGTCTTCGGTCGTTGACCCTCGTGGGTGGGATGCTTGGGGTTAT GCTGGCCATGAGGATAATTTCGTGTACGCCGAAATAGAGTGTAGCGGACCGGGATCGGACACGTCAAAACGGGTCTCATGGGAGAAGAAAATCAACTCTA GTAGCCAATTTTCGAGACAGACATTCATTGACCAAGATGGAAACTCCGGCGAGAGAGAGATTTCAGTTTCGCGCCTCGCCTTCTCCGGTGAGCTTGGGAA TGTATTCCTTCAAGTTCTTCAGGTTGAAGGAGCTGCAGCTCTTATTGGTTTGGAGGCCATGGTCCAATTCGCTCTCTCGGAATCCCTCCGTCCCAGTTTC AGCTTCTTCTCCCCGGCGGCTATATCGCATCCGCCGCCTTCGGGTCGAATTCGCTATCGCGTCTCCACTCGTCAATGGTTGACTTCGGACATCCGTTTCA GGATTAGGCATGTAAATTCGAGGTGCTCGAATGCGAATTCTGATGTACAATTCGACCATGCCGTGGATGATGATGAGTTCCCAGAAGAGGACTCTTGTCC CATTGTTCAGCTCAATACTGAGATTCTTGAGACTCCAAGTTTTGGTTTGTTGGTGGAAACAGCTGATGATGGGGATCGAATTTTGCTCGGGCTTCCTGTT CTTTCCAAGGAGGAGCAGAATGTACTTGCGGCCACCCCTACTCATCCGATTGGATTATATGCATTTTACGCTAATGTGGTGGCTGGAAACGTTGTGGAAA GCTTATGGGAGTTCGCCTGGCCCTCTGCTATTGCTTTGCTCCATCCGAGTCTTCTACCAGTGGCAGTCATCGGTTTCTTTGCTAAGTTGACTTTACTTGT TGGGGGGCCTTTTCTTGGAAAACTTATGGACTATTATCCAAGAGTACCATCATACATTACTCTAAATGTGATCCAGGCAGCTGCTCAGTTGTTGTGTGCA ACAATGATAATTCATGCTTACACTATCGCACCAAGTTCCTCGTCTTCTGTTGTCTTCCGTCCTTGGTTTGCTGTCCTAGTCCTGGCTGGCGCTGTTGAGA GACTATGTGGAGTAGCATTGGGAATTGCTAATGAGCGTGACTGGGTCGTGCAGTTAGCCGGGACGAATAGGCCTATTGCACTTGCAGAATCAAATGCTGT TCTCAGCCGTATTGATCTGCTTTCAGAGATAGCAGGGGCATCAATGTTTGGAGTTCTTCTGTCCAAGTATGGTCCAGTGACTTGTCTGAAATTTGCTTCT ACTTTGATGATTGGTTCATTGCCATTGATGATCGGGCTCACACTTTTAACGAACAAGCTGTCAAGTGGGATTCTCGCCAATGCTAGATCTTCTCAATCTT GTTGCAGAGGCCCCCTTGATCAAGCTATCAATCCAAATCACCATATAGTTGACCGATGCCTCGAAACATTCAAGCTTGGATGGAAGGAATATATTCAGCA GCCTGTTCTTCCTGCAAGCATTGCCTATGTGCTACTGTTCTTCAATGTTGTACTCGGTCCAACTAGTTTGATGACCGCGTTTTTGACTCAACGAGGAGTA AATTCGTCCATAATCGGTGGCTTCAGCGGACTGTGTGCTGTCATGGGGGTCGTCGCAACATTCCTCGCAGCAACTCTGGTCAAGCAACTTGGGATTCTAA AGGCTGTAGCTTTCGGATTAATATTCCAGGCTTCATTGCTTCTAATGGCTGTTACAGTATACTGGACTGGACCTCTTTCTAACCAGAGTTCCATCATCTT CTTCCTCGGCCTAATCGTACTATCAAGGCTGGGCCAAATGTCAACCGAAGTTGCGGGTGCACAAATTCTTCAGACAGGGATTCCATCATCAAAGGCGAAC CTGATCGGGATAACCGAGGCTTCAGTTGCCAGCTTAGCGGAATCCTTAATGCTTGGAGTAGCTATCGTAGCGAATGACGCTTCCCATTATGGCATGCTCG CAATGCTCTCAGTTACCGCAGTGGTTGGCTCCGCCTGGATCTTCTGCAGATGGGCAATGAACCCAACACCAGAACAAAGGCGGCTCTTCTCTTCTAACCC AACGCTTGAAATGATTGGGAGATGGAAGGACACTGTTCATTTGGCCGTAGCAGGCACGGCAATGTGTAACAAACTCCAAGGGAAAAGCTCCGAGGGTTGT TTGATTCTCTTGACTTAA
AA sequence Show only first row Show all	>Lus10031421 pacid=23155821 polypeptide=Lus10031421 locus=Lus10031421.g ID=Lus10031421.BGIv1.0 annot-version=v1.0 MRRQAGLLGPNELQASGQVGRQWGLLDVLSSTSLAAAAQECGGKPGFWGPANYRLVSKYSGGGSGAFSTVQAAIDSVPSYNSHWVKIHIKPGTYVEQVTI PQTKPCIFLEGEGSGATIIEYGAHAQTDTSSTFCSYPPNIVAKGITFKNTHNLLMTLPKNYSELGDPAVVPALAARIYGDKCAFYNCRFIGVQDTLWDTR GRHYYLNCYIRGAVDFIFGSGQSFYENTQIYATSEGFITAQRRSRRDEPNGFVFYGGHIGGPTGVRTFLGRAYGPFSRVIFHSTYMSSVVDPRGWDAWGY AGHEDNFVYAEIECSGPGSDTSKRVSWEKKINSSSQFSRQTFIDQDGNSGEREISVSRLAFSGELGNVFLQVLQVEGAAALIGLEAMVQFALSESLRPSF SFFSPAAISHPPPSGRIRYRVSTRQWLTSDIRFRIRHVNSRCSNANSDVQFDHAVDDDEFPEEDSCPIVQLNTEILETPSFGLLVETADDGDRILLGLPV LSKEEQNVLAATPTHPIGLYAFYANVVAGNVVESLWEFAWPSAIALLHPSLLPVAVIGFFAKLTLLVGGPFLGKLMDYYPRVPSYITLNVIQAAAQLLCA TMIIHAYTIAPSSSSSVVFRPWFAVLVLAGAVERLCGVALGIANERDWVVQLAGTNRPIALAESNAVLSRIDLLSEIAGASMFGVLLSKYGPVTCLKFAS TLMIGSLPLMIGLTLLTNKLSSGILANARSSQSCCRGPLDQAINPNHHIVDRCLETFKLGWKEYIQQPVLPASIAYVLLFFNVVLGPTSLMTAFLTQRGV NSSIIGGFSGLCAVMGVVATFLAATLVKQLGILKAVAFGLIFQASLLLMAVTVYWTGPLSNQSSIIFFLGLIVLSRLGQMSTEVAGAQILQTGIPSSKAN LIGITEASVASLAESLMLGVAIVANDASHYGMLAMLSVTAVVGSAWIFCRWAMNPTPEQRRLFSSNPTLEMIGRWKDTVHLAVAGTAMCNKLQGKSSEGC LILLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10031421 [exp]	0	1
AT1G09195			unknown protein		Lus10031400 [exp]	4.8	0.9477
AT3G20250		APUM5	pumilio 5 (.1)		Lus10034808 [exp]	6.0	0.9622
AT5G41810			unknown protein		Lus10003901 [exp]	6.8	0.9635
AT5G20660			Zn-dependent exopeptidases sup...		Lus10037997 [exp]	8.9	0.9503
AT3G25640			Protein of unknown function, D...		Lus10034386 [exp]	9.5	0.9504
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	12.1	0.9607
AT2G23450			Protein kinase superfamily pro...		Lus10011652 [exp]	13.6	0.9574
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022190 [exp]	14.2	0.9546
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10017094 [exp]	14.4	0.9508
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10036289 [exp]	14.6	0.9116

Compare expression of checked genes

Lus10031421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.