Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64920 211 / 2e-66 CIP8 COP1-interacting protein 8 (.1) AT5G01980 131 / 2e-34 RING/U-box superfamily protein (.1) AT5G15820 126 / 1e-33 RING/U-box superfamily protein (.1) AT5G08139 126 / 1e-33 RING/U-box superfamily protein (.1) AT3G19950 125 / 2e-33 RING/U-box superfamily protein (.1) AT3G02340 121 / 2e-31 RING/U-box superfamily protein (.1) AT3G46620 105 / 8e-26 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G60820 101 / 3e-24 RING/U-box superfamily protein (.1) AT2G40830 100 / 5e-24 RHC1A RING-H2 finger C1A (.1.2.3) AT5G56340 100 / 8e-24 ATCRT1 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010179 [exp] 117 / 4e-31 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10008874 [exp] 112 / 5e-28 AT5G08139 198 / 3e-59 RING/U-box superfamily protein (.1) Lus10023235 [exp] 109 / 6e-27 AT5G08139 194 / 7e-58 RING/U-box superfamily protein (.1) Lus10013397 [exp] 99 / 2e-23 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10030755 [exp] 97 / 3e-23 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10013235 [exp] 97 / 4e-23 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10040783 [exp] 94 / 3e-22 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10020258 [exp] 96 / 1e-21 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10002637 [exp] 94 / 1e-21 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G065300 [exp] 135 / 4e-36 AT5G08139 178 / 4e-51 RING/U-box superfamily protein (.1) Potri.015G047900 [exp] 132 / 4e-35 AT5G08139 201 / 3e-60 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 124 / 5e-33 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 121 / 2e-32 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 121 / 7e-32 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 120 / 7e-32 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.006G112100 [exp] 120 / 2e-30 AT5G01980 293 / 1e-92 RING/U-box superfamily protein (.1) Potri.016G141600 [exp] 117 / 2e-30 AT5G01980 226 / 1e-69 RING/U-box superfamily protein (.1) Potri.003G223200 [exp] 105 / 2e-25 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.013G060500 [exp] 102 / 8e-25 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10031422 pacid=23155865 polypeptide=Lus10031422 locus=Lus10031422.g ID=Lus10031422.BGIv1.0 annot-version=v1.0 ATGCTCCGTATAGTCGCTGAAGCCGCTCGCGATGAGGACGCGCCACCTCCTCCTCCTCCCAACCAGCGCCACCGCGATCTCGCCCAATCGGAGGACGATT TCCTCCGTATCGACCTGGATGGATGGGGAAATGAAGATTACGAGGAGGAGGAAGAGCCAGAAGAGGAGGAGGAGGAGGAGGTGGAAGAAGAAGAAGAGGA AGAGGAAGATGACGTCGATGTCCAGGAGGAGGATGAGGAGGTGAATACGAATGAGAACGAGGAACCGAATAGGAACGACGATGGAGTTGATCGATCTGAT AGCGACGGTGTTGTTGTTGACGAAGATGATGACGACGGCGGATTGGAAGATCGGAGGCGCCGCCGAGAAATCCTGCGTCTCCGAGTCCGCGACTTTGCGA CGCGAACGAGGACAGGACGGAACCGGATTCTCGATTGGGCGGAGATCCTGATGGGATTGGAGGACAACTCGATCGAATTCCGTCTCGAATCGGATAGATA CATAGGCAATCCAGAGGACTATGTGGACGCTGCGGGATACGAGGCTCTGCTGCAGAACTTAGCTGACAGTGAAGGTGGAAGGAAAGGTGCTCCGCCGGCG TCTAAGTCGGCGATCTCTGCTTTGCCGATGGTCGAAGTTACTTCCAAGGAGGAGGCATCGGTTTGTGCCGTGTGTAAGGACATGATCGACGTTGGTGAAA TGGAAACGAAACTGCCGTGTGGACATGGATACCATGGTGAATGCATAGTGCCATGGCTTGGGTCGAGGAACTCTTGCCCCGTTTGTAGGTTTGAGCTGCC AACTGATGATCCAGAGTACGAGGAAGAGAGGACGAGGAAAAGGGAAGGGGTAGCTGGTGGCTGGGGAGCTTTATCAGCAGCATCATCCGGCCATGGTGGA GATAGCTCAGGTATCATTTGA
AA sequence Show only first row Show all	>Lus10031422 pacid=23155865 polypeptide=Lus10031422 locus=Lus10031422.g ID=Lus10031422.BGIv1.0 annot-version=v1.0 MLRIVAEAARDEDAPPPPPPNQRHRDLAQSEDDFLRIDLDGWGNEDYEEEEEPEEEEEEEVEEEEEEEEDDVDVQEEDEEVNTNENEEPNRNDDGVDRSD SDGVVVDEDDDDGGLEDRRRRREILRLRVRDFATRTRTGRNRILDWAEILMGLEDNSIEFRLESDRYIGNPEDYVDAAGYEALLQNLADSEGGRKGAPPA SKSAISALPMVEVTSKEEASVCAVCKDMIDVGEMETKLPCGHGYHGECIVPWLGSRNSCPVCRFELPTDDPEYEEERTRKREGVAGGWGALSAASSGHGG DSSGII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64920		CIP8	COP1-interacting protein 8 (.1...		Lus10031422 [exp]	0	1
AT4G18372			Small nuclear ribonucleoprotei...		Lus10042823 [exp]	1.7	0.8440
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10010328 [exp]	2.8	0.8270
AT1G26800			RING/U-box superfamily protein...		Lus10036757 [exp]	3.0	0.8309
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10021304 [exp]	3.9	0.8235
AT1G17100			SOUL heme-binding family prote...		Lus10042093 [exp]	5.3	0.8324
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10008652 [exp]	5.5	0.8114
AT1G27350			Ribosome associated membrane p...		Lus10037031 [exp]	5.7	0.8108
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10004005 [exp]	5.8	0.8006
AT2G37975			Yos1-like protein (.1)		Lus10000226 [exp]	8.0	0.8145
AT5G55670			RNA-binding (RRM/RBD/RNP motif...		Lus10038757 [exp]	8.1	0.7417

Compare expression of checked genes

Lus10031422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.