Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 521 / 2e-178 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 506 / 4e-171 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 491 / 3e-166 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 488 / 2e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 488 / 9e-164 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 464 / 2e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 461 / 4e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 443 / 1e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14820 447 / 3e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 449 / 4e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010909 [exp] 1226 / 0 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010908 [exp] 830 / 0 AT5G48910 410 / 5e-135 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 512 / 5e-175 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 512 / 2e-173 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 502 / 1e-170 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 501 / 3e-170 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 503 / 1e-169 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 499 / 4e-168 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 497 / 3e-167 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G012600 [exp] 835 / 0 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 531 / 0 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 526 / 1e-178 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 512 / 2e-173 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 506 / 7e-173 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 502 / 3e-170 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 498 / 1e-167 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G237000 [exp] 493 / 2e-167 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G035900 [exp] 489 / 9e-166 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 483 / 1e-163 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10031423 pacid=23155915 polypeptide=Lus10031423 locus=Lus10031423.g ID=Lus10031423.BGIv1.0 annot-version=v1.0 ATGAACGCAGTCGCCACAAATCCTCCTCCTCCACCTTATCACCATCACCACCATCATCCTCCCCAAACCCAACCCATCTCAATTCCCACCCAGAAATCAA TCCTAGACCTTCTCGATTCCAAATCCACACCTCCTTCGCAAATCCACGCCCTCGTCGTCAAAACCGGCCATTTCCAGGACCACTTCGTCTCCGGCACCTT ACTCAAATCCTACGCCACCAACCACAGCTTGGACCACGCTCTCCAGATCTTCCGCCATGTCCCTTCCCCAAACGTCTTTGTCTACAACGTCCTCATCAAA GCCAGCATCGACAACGACAAGCCCCAAACGGCTATGTCGCTCTACCGCCAGCTGATGGTCAACAAGGCCAAGCCGAATGAGTACACTTACACTCCTCTGT TCAAAGCTTGTGGGAGTTTTTCAGAAGGGATTCAAATTCATGGTCATGTTGTTAAGTTCGGGTTGTGCGGAGATAACCATATCAAGAGCGCTGGAATTCG AATGTATGGGAGGTTTGGGAAAGTGAATGATGCCAGGAAGTTGCTTGATGAAGGATGTGATGAATGCGACGTGGTTTGTTGGAATGCGGTGATCGATGGA TATTTCAAAGCTGGGGAGGTTGAAGCTGCACGGAAGCTGTTCGATGAAATGACCGAGAGAAACATTGGGTCTTGGAATGCTGTGGTTAGCGGGTTGGCTA AGGCTGGGAAGGTTGAGGAAGCTAGGAAAGTGTTTGATGAGATGGAAAAACGAGATGAGATAACATGGAGCGGTTTGATCGATGGGTATATTAATGGCGG ATTTTACAAAGAGGCTTTGGAAGTTTTTAATTTGATGCAGAACGAAGGAATCGAGCTGAGTAGGTTTGCCTTGACGAGTGTGCTTTCGGCTTGTGCTCAT CTCGGAGCTCTTGATCAGGGTAGATGGATTCATGCTTACGTTAAGAAGAATAGGAAGAGGAAGATGGATCCAACAATGGCGACTGCTTTGCTAGACATGT ATGCGAAATGCGGGAGGCTGGATATGGCTTGGGAAGTGTTCGAGAGCTTGAAGAACAAGCAGGTGTTCACATGGAACGCAATGATCGGCGGGATGGCGAT CCACGGTCGAGCTCAAGATGCTATAGAGCTGTTTATGGAAATGCAGAGGAAGAAGTTCAAACCGAACGAGATCACGTTCGTAGGGGTGTTGAATGCCTGT GCTCATTCGGGAGATGTCGATCGCGCTATGGAGATTTTCGATTCGATGGAGGTCGTTTACGGAATTGTACCAGGTGTCGAGCATTACGGCTGTTTGGTTC ATGGTTTGGCTAGAGCAGGAAGGTTGGAAGAGGCCGAGGAATTACTCGATTCGATGCCGATGCCACCCAATGCAGCGGTCTACGGAGCCATACTCGGCGG GTGTAGGATCCATGGGAATGTGGATCTAGGCGAGCGAGTCGGGAAGATTCTACTCGAGATCGATCCGGATAACAGCGGACGGTACGCATTGCTATCGAAC ATCTACGCAAAGGCCGAGAGGTGGGAAGACGTCGTTAAGGTGAGAAAGCTGATGAAGGAACGAGGGGTTAAGACCGTTGCCGGGAGCAGCATGATCGATT TCGGCGGGTGCATTCACGAGTTCAAGATGGGCGAAACGTCCCACCCGCAAATGGAGGATATTTACTCGATGCTCGAGGCGATGATTGCAAGACTCGAGGT GGAGGGGTACGTGCCGAACACTTCACAGGTGATGCTCGACATCGGGGAAGAGGAGAAGGAAGGGGCGTTGCGGTATCACAGCGAGAAGCTGGCGATCGCA TTCGGGTTTATTAACACGAAGGCCGGGACGACGATAAGGGTAGTGAAGAACCTGAGGGTTTGTGATGATTGTCATAATGCTATCAAGCTTATCTCGAGAG TTTATGGTCGAGATGTTATACTGAGGGATCGGGTTAGGTACCATCATTTCAGGAATGGTGCTTGTTCTTGTAATGACTTTTGGTAG
AA sequence Show only first row Show all	>Lus10031423 pacid=23155915 polypeptide=Lus10031423 locus=Lus10031423.g ID=Lus10031423.BGIv1.0 annot-version=v1.0 MNAVATNPPPPPYHHHHHHPPQTQPISIPTQKSILDLLDSKSTPPSQIHALVVKTGHFQDHFVSGTLLKSYATNHSLDHALQIFRHVPSPNVFVYNVLIK ASIDNDKPQTAMSLYRQLMVNKAKPNEYTYTPLFKACGSFSEGIQIHGHVVKFGLCGDNHIKSAGIRMYGRFGKVNDARKLLDEGCDECDVVCWNAVIDG YFKAGEVEAARKLFDEMTERNIGSWNAVVSGLAKAGKVEEARKVFDEMEKRDEITWSGLIDGYINGGFYKEALEVFNLMQNEGIELSRFALTSVLSACAH LGALDQGRWIHAYVKKNRKRKMDPTMATALLDMYAKCGRLDMAWEVFESLKNKQVFTWNAMIGGMAIHGRAQDAIELFMEMQRKKFKPNEITFVGVLNAC AHSGDVDRAMEIFDSMEVVYGIVPGVEHYGCLVHGLARAGRLEEAEELLDSMPMPPNAAVYGAILGGCRIHGNVDLGERVGKILLEIDPDNSGRYALLSN IYAKAERWEDVVKVRKLMKERGVKTVAGSSMIDFGGCIHEFKMGETSHPQMEDIYSMLEAMIARLEVEGYVPNTSQVMLDIGEEEKEGALRYHSEKLAIA FGFINTKAGTTIRVVKNLRVCDDCHNAIKLISRVYGRDVILRDRVRYHHFRNGACSCNDFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10031423 [exp]	0	1
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10022853 [exp]	1.4	0.8411
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10024433 [exp]	2.2	0.8889
AT2G44870			unknown protein		Lus10020395 [exp]	2.4	0.8316
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10004197 [exp]	3.2	0.8320
AT3G59980			Nucleic acid-binding, OB-fold-...		Lus10025611 [exp]	4.2	0.7944
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10028034 [exp]	4.9	0.8383
AT1G09680			Pentatricopeptide repeat (PPR)...		Lus10014170 [exp]	6.3	0.8253
AT2G22360			DNAJ heat shock family protein...		Lus10000631 [exp]	7.0	0.8304
AT4G34540			NmrA-like negative transcripti...		Lus10023558 [exp]	7.9	0.7783
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10028953 [exp]	8.1	0.8147

Compare expression of checked genes

Lus10031423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.