Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26800 119 / 5e-36 unknown protein AT3G05810 110 / 2e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015444 [exp] 150 / 1e-48 AT5G26800 147 / 2e-47 unknown protein Lus10011180 [exp] 144 / 4e-46 AT5G26800 143 / 1e-45 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G011800 [exp] 131 / 7e-41 AT5G26800 125 / 2e-38 unknown protein Potri.013G007600 [exp] 115 / 1e-34 AT3G05810 116 / 5e-35 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [flax] [poplar] SAM PF09597 [flax] [poplar] IGR IGR protein motif
Representative CDS sequence Show only first row Show all	>Lus10031426 pacid=23155781 polypeptide=Lus10031426 locus=Lus10031426.g ID=Lus10031426.BGIv1.0 annot-version=v1.0 ATGGCTCTTCTGCGACGACTACTATCGCAGGCGAAAGTTGCAGCAGCAAATCCAGCACCGGGGTTTTCCAGATTCTACTCCCAATCCTCCTCCCCTTATC TTGTGAAAGTTGGGATCCCGGAATTCCTGAATGGGATAGGGAAAGGTGTTGAAACTCATGTGGCCAAGCTTGAAAACGAGATCGGAGAGTTCCAGAAGCT TCTCGTTACCAGGACCTTGAAGCTCAAGAAGCTAGGAATCCCTTGCCAACATAGGAAGCTGATGCTGAACTACGCACAGAAGTATAGGCTAGGACTGTGG CGGCCTAGAGCATTGCCTCCGAAAGTCAAGTAA
AA sequence Show only first row Show all	>Lus10031426 pacid=23155781 polypeptide=Lus10031426 locus=Lus10031426.g ID=Lus10031426.BGIv1.0 annot-version=v1.0 MALLRRLLSQAKVAAANPAPGFSRFYSQSSSPYLVKVGIPEFLNGIGKGVETHVAKLENEIGEFQKLLVTRTLKLKKLGIPCQHRKLMLNYAQKYRLGLW RPRALPPKVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26800			unknown protein		Lus10031426 [exp]	0	1
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10043279 [exp]	1.0	0.9033
AT2G31410			unknown protein		Lus10031995 [exp]	2.8	0.8681
AT5G38720			unknown protein		Lus10008877 [exp]	6.0	0.8633
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10028655 [exp]	7.3	0.8782
AT4G33100			unknown protein		Lus10014752 [exp]	9.7	0.8428
AT1G48170			unknown protein		Lus10011844 [exp]	10.2	0.8376
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10018609 [exp]	10.4	0.8428
AT3G52040			unknown protein		Lus10039586 [exp]	11.2	0.8554
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002027 [exp]	13.5	0.8618
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035972 [exp]	24.7	0.8517

Compare expression of checked genes

Lus10031426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.