Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09300 636 / 0 Metallopeptidase M24 family protein (.1.2) AT4G29490 121 / 1e-29 Metallopeptidase M24 family protein (.1) AT3G05350 55 / 7e-08 Metallopeptidase M24 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010905 [exp] 955 / 0 AT1G09300 642 / 0.0 Metallopeptidase M24 family protein (.1.2) Lus10008578 [exp] 127 / 1e-31 AT4G29490 768 / 0.0 Metallopeptidase M24 family protein (.1) Lus10032694 [exp] 85 / 4e-17 AT4G29490 687 / 0.0 Metallopeptidase M24 family protein (.1) Lus10004479 [exp] 61 / 2e-09 AT3G05350 910 / 0.0 Metallopeptidase M24 family protein (.1) Lus10029923 [exp] 59 / 5e-09 AT3G05350 978 / 0.0 Metallopeptidase M24 family protein (.1) Lus10035045 [exp] 45 / 0.0001 AT1G13270 466 / 3e-165 methionine aminopeptidase 1B (.1.2) Lus10021701 [exp] 45 / 0.0001 AT1G13270 518 / 0.0 methionine aminopeptidase 1B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G007100 [exp] 725 / 0 AT1G09300 643 / 0.0 Metallopeptidase M24 family protein (.1.2) Potri.006G149500 [exp] 112 / 1e-26 AT4G29490 767 / 0.0 Metallopeptidase M24 family protein (.1) Potri.013G021400 [exp] 57 / 2e-08 AT3G05350 1025 / 0.0 Metallopeptidase M24 family protein (.1) Potri.008G117200 [exp] 47 / 1e-05 AT1G13270 531 / 0.0 methionine aminopeptidase 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24 CL0356 [flax] [poplar] AMP_N-like PF05195 [flax] [poplar] AMP_N Aminopeptidase P, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031427 pacid=23155971 polypeptide=Lus10031427 locus=Lus10031427.g ID=Lus10031427.BGIv1.0 annot-version=v1.0 ATGCAGATTCTGTTCCGCAAGTTTCTACGGCTAAGCCCTCCGTTGGGAAGAAATGTCATCGGTTGTTGCGCGTATTCGTCAAGTAAGATTCTTGACATCG GACAGCCGACTCCTGCAACTCATCCTCAGCTGTTGAAGGAGGGAGAACTCACACCTGGAATAAGTAGCGATGAGTACATATCCCGGAGGAAGAAGCTGTT GGATCTACTCCCTGAGAACAGTTTAGCTATTATTGCTGCCGCGCCCGTTAAGATGATGACTGATGTTGTACCTTACACATTTCGGCAAGATTCTGACTAT TCATACATTACTGGATGCCAGCAACCTGGCGGTGTGGCCGTTTTGGGTCATGAGTTCGGTTTATGCATGTTCATGCCAGAAGCATCAGTTCATGATGTTA CTTGGCAAGGACCAACTGCAGGAGCTCATACAGCTTTGGACATATTCAAGGCCGAGAAAGCATATCCTTTGAGTAAATTAAGAAAGGTTCTTCCAGATAT GATCAGGGGATGCTCCACGGTGTTCCACAACACTTTAACGGCCATACCAAAATACACAGAGTTGGAGGCCTACCAAAAGGTTGCTTTAACGGGAAAGGTT GAAGATCTTTCGTGTTTCACACATGTGTTACGTTGGGTGAAATCACCTTCGGAGCTGAAGTTAATGAGAGACTCTGCATCAATTGTTTGCCAGGCTCTCT TGCAAACGATGTTACATTCCAAGACTTACCCGTATGAGGGTATGTTGGCTGCAAAAGTTGAATATGAAAGCAAAATGAGAGGTGCTCAAAGGATGGCATT TAATCCTGTTGTTGGTGGAGGTTCGAATGCCAGCGTCATTCATTATTCTCGGAACGATCAAAGTATTAAAGATGGGGATCTTGTTCTGATGGATGTTGGA TGCGAGTTGCATGGTTATGCCAGTGATCTAACTCGAACATGGCCGCCATGTGGCTGCTTTTCTTCGGCACAAGGAGAGCTTTATGAACTTATCCTTCGAA CAAACAAAGAATGCATCGAGCTTTGTAGACCTGGAACAAGCATTCGTCAGATTCATGATCACTCGGTTGCCATGATGCGTAAAGGACTTGCGGAGATTGG ACTTCTGAGAAATAGCGGAAGCAATTCGTACCATCAGCTGAATCCGACTTCTATAGGTCACTACCTTGGAATGGACGTTCATGATAGTTCTTCCCTCAGC TATGATCGTCCATTGAAGCCTGGTGTTGTCATAACCATTGAGCCAGGAGTATACGTTCCACTGAGCTCTGAGGTTCCGGAAAGGTACCAAGGCATTGGCA TAAGGATTGAGGATGAGGTCCTAATTACGGAAACCGGTTATGAGGTACCCAATTTACTGAATTTCGGTCTGTTAATCTGCATCAGAGAGACTTTTCAGTT AAAAAGAGGTATCTTTCCTGCTTGTGCAATCAGGTACTTACAGGGTCCATGCCGAAGGAAGTGA
AA sequence Show only first row Show all	>Lus10031427 pacid=23155971 polypeptide=Lus10031427 locus=Lus10031427.g ID=Lus10031427.BGIv1.0 annot-version=v1.0 MQILFRKFLRLSPPLGRNVIGCCAYSSSKILDIGQPTPATHPQLLKEGELTPGISSDEYISRRKKLLDLLPENSLAIIAAAPVKMMTDVVPYTFRQDSDY SYITGCQQPGGVAVLGHEFGLCMFMPEASVHDVTWQGPTAGAHTALDIFKAEKAYPLSKLRKVLPDMIRGCSTVFHNTLTAIPKYTELEAYQKVALTGKV EDLSCFTHVLRWVKSPSELKLMRDSASIVCQALLQTMLHSKTYPYEGMLAAKVEYESKMRGAQRMAFNPVVGGGSNASVIHYSRNDQSIKDGDLVLMDVG CELHGYASDLTRTWPPCGCFSSAQGELYELILRTNKECIELCRPGTSIRQIHDHSVAMMRKGLAEIGLLRNSGSNSYHQLNPTSIGHYLGMDVHDSSSLS YDRPLKPGVVITIEPGVYVPLSSEVPERYQGIGIRIEDEVLITETGYEVPNLLNFGLLICIRETFQLKRGIFPACAIRYLQGPCRRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09300			Metallopeptidase M24 family pr...		Lus10031427 [exp]	0	1
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10043201 [exp]	1.4	0.8961
AT1G08220			unknown protein		Lus10005355 [exp]	5.3	0.8766
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	10.4	0.8898
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Lus10041433 [exp]	12.0	0.8729
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10040040 [exp]	13.2	0.8824
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10028804 [exp]	13.7	0.8626
AT1G54650			Methyltransferase family prote...		Lus10006576 [exp]	14.9	0.8900
					Lus10010342 [exp]	16.2	0.8404
AT5G12290		DGS1	dgd1 suppressor 1 (.1)		Lus10038461 [exp]	16.7	0.8698
AT5G01470			S-adenosyl-L-methionine-depend...		Lus10004816 [exp]	17.3	0.8557

Compare expression of checked genes

Lus10031427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.