Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09310 174 / 2e-56 Protein of unknown function, DUF538 (.1) AT1G56580 160 / 7e-51 SVB SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) AT5G46230 121 / 8e-36 Protein of unknown function, DUF538 (.1) AT4G24130 115 / 4e-33 Protein of unknown function, DUF538 (.1) AT5G49600 108 / 3e-30 Protein of unknown function, DUF538 (.1) AT1G30020 100 / 1e-27 Protein of unknown function, DUF538 (.1) AT1G61667 45 / 3e-06 Protein of unknown function, DUF538 (.1) AT5G19860 44 / 1e-05 Protein of unknown function, DUF538 (.1) AT1G02816 41 / 8e-05 Protein of unknown function, DUF538 (.1) AT5G54530 39 / 0.0004 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010904 [exp] 275 / 3e-96 AT1G09310 185 / 1e-60 Protein of unknown function, DUF538 (.1) Lus10018630 [exp] 211 / 2e-70 AT1G09310 195 / 5e-64 Protein of unknown function, DUF538 (.1) Lus10039866 [exp] 207 / 5e-69 AT1G09310 196 / 5e-64 Protein of unknown function, DUF538 (.1) Lus10017330 [exp] 115 / 6e-33 AT4G24130 209 / 3e-70 Protein of unknown function, DUF538 (.1) Lus10001674 [exp] 110 / 2e-31 AT4G24130 212 / 2e-71 Protein of unknown function, DUF538 (.1) Lus10000355 [exp] 107 / 3e-30 AT5G46230 117 / 1e-34 Protein of unknown function, DUF538 (.1) Lus10017655 [exp] 103 / 5e-29 AT1G56580 115 / 1e-33 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Lus10037804 [exp] 103 / 2e-28 AT5G49600 144 / 2e-44 Protein of unknown function, DUF538 (.1) Lus10017087 [exp] 104 / 1e-27 AT5G49600 145 / 3e-43 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G011200 [exp] 199 / 2e-66 AT1G56580 192 / 4e-63 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.013G007000 [exp] 192 / 2e-63 AT1G56580 176 / 5e-57 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.004G064700 [exp] 146 / 1e-45 AT5G46230 184 / 4e-61 Protein of unknown function, DUF538 (.1) Potri.003G146400 [exp] 127 / 5e-38 AT4G24130 211 / 5e-71 Protein of unknown function, DUF538 (.1) Potri.001G084200 [exp] 124 / 5e-37 AT4G24130 208 / 5e-70 Protein of unknown function, DUF538 (.1) Potri.010G149100 [exp] 108 / 2e-30 AT5G49600 152 / 3e-47 Protein of unknown function, DUF538 (.1) Potri.004G084600 [exp] 97 / 4e-26 AT1G56580 96 / 9e-26 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.017G133300 [exp] 95 / 1e-25 AT1G56580 69 / 1e-15 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.004G056700 [exp] 94 / 2e-25 AT1G09310 99 / 4e-27 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 45 / 3e-06 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10031428 pacid=23156040 polypeptide=Lus10031428 locus=Lus10031428.g ID=Lus10031428.BGIv1.0 annot-version=v1.0 ATGTCTCTAGTCACCGAAGAGATCAAGGCGAAAGCCAACGAGATATACAGAGGGGACGAGATCTGCCAGGTGAAATCCAAGGTCCTGCTCGAAGAGATCG AGCTCCCCAACGGGTTGCTTCCTTTACACGACATCGAGGAGTGTGGGATCGTAAGGGAGACGGGTTTCGTGTGGCTGAAGCAGAAGAAGAGCATCACCCA CGAGTTCGTCAAGGCCGGGAGGTCGGTCATCTACGGACCAGAGGTGACAGCATACGTTTCAAAGGGGAAAATCACCAAGCTTACTGGAGTGACTACTAAG GAGCTCCTGATCTGGGTCTCGGTTGGGGATATCTATGTCGAAGACCCGCCGACTGGGAACATCACTTTCAAGTCCCCCACTGGGCTCTACAGGACTTTCC CTGTCACTGCTTTCATGGCTGATGAGCCTGCTGCTGCTGCAGCATCGGATGCTCCCAAAGTCGTTGCGACAGAAGCTTGA
AA sequence Show only first row Show all	>Lus10031428 pacid=23156040 polypeptide=Lus10031428 locus=Lus10031428.g ID=Lus10031428.BGIv1.0 annot-version=v1.0 MSLVTEEIKAKANEIYRGDEICQVKSKVLLEEIELPNGLLPLHDIEECGIVRETGFVWLKQKKSITHEFVKAGRSVIYGPEVTAYVSKGKITKLTGVTTK ELLIWVSVGDIYVEDPPTGNITFKSPTGLYRTFPVTAFMADEPAAAAASDAPKVVATEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09310			Protein of unknown function, D...		Lus10031428 [exp]	0	1
AT1G09310			Protein of unknown function, D...		Lus10010904 [exp]	1.0	0.9677
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10020343 [exp]	1.4	0.9512
AT1G11340			S-locus lectin protein kinase ...		Lus10020052 [exp]	3.0	0.9494
					Lus10041636 [exp]	7.1	0.9419
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10002174 [exp]	9.2	0.9355
AT1G17200			Uncharacterised protein family...		Lus10042471 [exp]	9.2	0.9486
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10009799 [exp]	9.8	0.9386
AT1G54730			Major facilitator superfamily ...		Lus10033815 [exp]	9.8	0.9342
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10026461 [exp]	9.8	0.9251
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10021614 [exp]	11.4	0.9113

Compare expression of checked genes

Lus10031428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.