Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09320 129 / 1e-32 agenet domain-containing protein (.1) AT3G06520 99 / 2e-22 agenet domain-containing protein (.1) AT1G26540 94 / 2e-20 Agenet domain-containing protein (.1) AT1G11420 89 / 7e-19 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT2G47230 83 / 9e-17 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) AT1G06340 76 / 2e-16 Plant Tudor-like protein (.1) AT1G03300 66 / 2e-11 ATDUF1 DOMAIN OF UNKNOWN FUNCTION 724 1 (.1) AT1G68580 64 / 1e-10 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT3G62300 59 / 3e-09 ATDUF7 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) AT5G23800 56 / 4e-08 ATDUF10 ,DUF 10 DOMAIN OF UNKNOWN FUNCTION 724 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010903 [exp] 658 / 0 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1) Lus10000615 [exp] 169 / 6e-47 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000353 [exp] 171 / 2e-46 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10017088 [exp] 108 / 1e-25 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10037805 [exp] 108 / 1e-25 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10002437 [exp] 88 / 2e-18 AT3G62300 252 / 1e-73 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10027325 [exp] 81 / 6e-18 AT1G06340 95 / 2e-25 Plant Tudor-like protein (.1) Lus10039027 [exp] 78 / 5e-17 AT1G06340 91 / 7e-24 Plant Tudor-like protein (.1) Lus10010060 [exp] 82 / 2e-16 AT2G47230 168 / 2e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G011100 [exp] 157 / 4e-44 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.013G006900 [exp] 154 / 6e-43 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.009G151200 [exp] 89 / 4e-21 AT1G06340 141 / 3e-44 Plant Tudor-like protein (.1) Potri.002G192300 [exp] 90 / 5e-19 AT1G26540 201 / 3e-54 Agenet domain-containing protein (.1) Potri.014G117800 [exp] 82 / 1e-16 AT1G11420 194 / 1e-52 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) Potri.001G173900 [exp] 70 / 7e-13 AT4G32440 208 / 2e-63 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.010G126700 [exp] 65 / 4e-11 AT1G68580 478 / 1e-160 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.001G365800 [exp] 64 / 1e-10 AT5G55600 663 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.009G155250 [exp] 56 / 7e-10 AT1G06340 85 / 1e-22 Plant Tudor-like protein (.1) Potri.009G072600 [exp] 60 / 2e-09 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10031429 pacid=23155991 polypeptide=Lus10031429 locus=Lus10031429.g ID=Lus10031429.BGIv1.0 annot-version=v1.0 ATGTCCAAGCCCTCTTCGTCTTCTACTCCTTCCGCGCCAAAGTTCAAATCTGGCCAGCGAGTGGAGATCCGCTCAGGCGACCCCGGATTCCGGGGACCGT GGTACACCGCCGTCGTCCTCCGCCGCGATAAGTTAAACCCTAATCACTACCGAGTCCAGTACGAGAAGCTGTTCGAGGACGAATCCGAGCGGGATCCGCT CCAGCAAACCCTAGATTGTGGGAAACTGAGGCCCGCGCTGCCTGTCGACAAGACGAACAAGATCAGTTTCAAGCTCGGCGACGAAGTCGATACCTACCAC AGCGACGGCTGGTGGGAAGGGACGATTGCGTCGGCGAGACCCGACGGGAAGTTTGTCGTTTCGTTCAGGAGCTTGAAGGAGGAGCAGCAGACTGTGTTCG GAGAGAAGGATTTGAGGCTTCGGATGGATTGGATTGATGGCAAGTGGCAGCTCCCTTTCCAGCAGATATCATCAGAAGAAACTGAATCCAGGCCTATAGA AGCAATCAAACGCCAGAGATTTGAACATGCCAAGGTTAACAATATGCCTCCGGGAGAGTCCATTAAAGTCATAAGAGGGAAGAGGCTCTCAGTGAGCGAA GAGCATTCCGAGAATTCCAAATTCCGCACCATCTGGACGACCACCTCCAACGTTGCGAAAGAGAGCTCAGCTGAAACAACTGAAACCAGGCCCTACAAAG TACCGAAATGCACAGAATCCGACCGTGTTAAGGTTAACAATGCATCTGGCAAAGGAGAACCTGTAAAAATTGCCAAAGAGAAGAAGTTCTCAGCAAGTGC AGAGCATTCCAACAATTCGGAATTCCCCACCAAGACGAAGAAGACCACCCTTAAAGAGATGAAGTTCGATTCGGGGATGAAAGTCGAGGTTACTAGCGAC GAAGAGGGTTTCAAAGGCACTTGGTACCTTGCGAAGATCATCGAACCTTCAGGGAAAGACAAGTACCTTGTTGAGTACGAGACGTTGAAAAACGAAGCCG AGACTGAATTCCTGAGAGAAGATGTACGTGCCGGGTACATAAGGCCTCGCCAACCGGAGTTTGTCATTGTCGACGGTTTGAAGTTGACGGACAAAGTCGA TGCTTACTACAACGATGGCTGGTGGGTTGGCGTTGTTGTGAAAGTTATGACCGATAGCAGGTACAAGGTCTACTTCAACGAAAGTAAGGAGCACATAGTG TTTAAGGAGCATTACTTAAGACTGCATAAAGACTGGTCGTACGGCGATTGGGTCGACCCTTAA
AA sequence Show only first row Show all	>Lus10031429 pacid=23155991 polypeptide=Lus10031429 locus=Lus10031429.g ID=Lus10031429.BGIv1.0 annot-version=v1.0 MSKPSSSSTPSAPKFKSGQRVEIRSGDPGFRGPWYTAVVLRRDKLNPNHYRVQYEKLFEDESERDPLQQTLDCGKLRPALPVDKTNKISFKLGDEVDTYH SDGWWEGTIASARPDGKFVVSFRSLKEEQQTVFGEKDLRLRMDWIDGKWQLPFQQISSEETESRPIEAIKRQRFEHAKVNNMPPGESIKVIRGKRLSVSE EHSENSKFRTIWTTTSNVAKESSAETTETRPYKVPKCTESDRVKVNNASGKGEPVKIAKEKKFSASAEHSNNSEFPTKTKKTTLKEMKFDSGMKVEVTSD EEGFKGTWYLAKIIEPSGKDKYLVEYETLKNEAETEFLREDVRAGYIRPRQPEFVIVDGLKLTDKVDAYYNDGWWVGVVVKVMTDSRYKVYFNESKEHIV FKEHYLRLHKDWSYGDWVDP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09320			agenet domain-containing prote...		Lus10031429 [exp]	0	1
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10023028 [exp]	1.0	0.9623
AT4G38870			F-box and associated interacti...		Lus10034309 [exp]	7.3	0.8945
AT3G07610		IBM1	increase in bonsai methylation...		Lus10027890 [exp]	8.5	0.9335
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Lus10005931 [exp]	9.0	0.9154
AT5G60370			unknown protein		Lus10023342 [exp]	16.5	0.9039
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10032528 [exp]	18.3	0.9122
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10003954 [exp]	20.0	0.9031
AT2G45340			Leucine-rich repeat protein ki...		Lus10004032 [exp]	22.2	0.9017
AT4G17000			unknown protein		Lus10035651 [exp]	24.6	0.9106
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Lus10041617 [exp]	26.3	0.9060

Compare expression of checked genes

Lus10031429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.