Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06540 351 / 4e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15930 343 / 3e-112 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 340 / 1e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 339 / 2e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 341 / 3e-111 SLO1 SLOW GROWTH 1 (.1) AT3G62890 322 / 2e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 322 / 9e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 322 / 2e-104 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 323 / 8e-104 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56310 313 / 3e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010901 [exp] 760 / 0 AT3G15930 360 / 2e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004052 [exp] 355 / 1e-117 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10002288 [exp] 353 / 8e-117 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10029344 [exp] 350 / 2e-115 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 345 / 1e-113 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 346 / 8e-113 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 343 / 1e-112 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 345 / 3e-112 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 338 / 3e-111 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G011000 [exp] 598 / 0 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 382 / 3e-128 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G245300 [exp] 376 / 4e-123 AT3G22690 570 / 0.0 unknown protein Potri.001G019500 [exp] 365 / 1e-120 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.003G088600 [exp] 360 / 5e-119 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G031600 [exp] 358 / 2e-117 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G237000 [exp] 348 / 6e-115 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G223900 [exp] 346 / 6e-115 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G141200 [exp] 344 / 3e-114 AT5G66520 407 / 1e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G202600 [exp] 342 / 1e-113 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10031430 pacid=23155986 polypeptide=Lus10031430 locus=Lus10031430.g ID=Lus10031430.BGIv1.0 annot-version=v1.0 ATGGTGTTTAATGGAGTTTCGGTGGATGAGATCGTCCTGATCAGTGCTCTTTCAGCTTGTGCTCATTCCTTGGTAGTTAAGATGGGGAAATCGATCCATG CTTTGGCTATCAAAGTCGGGATTGATCTATACGTTAACCTGCAAAATGCATTGATTCACATGTACTCGGTTTGCGGCGAGTTAGTTGCTGCTGAGAAGTT GTTTGGCTATGGCTCTTGCTTGGACCTAATATCTTGGAACTCTATGATTTCAGGGTACTTGAAATGCGGGGAGATTGACAAGGCTAGGAGTTTATTCAAT TCGATGCCGCGGAAGGATACCGTGTCGTGGAATGTTATGATATCTGGGTATGCTCAACACGATAGGTTTGCTGATGCATTGGCGTTGTTCCAGGATATGC TGAATGATAATATTCTGCCTGATGATACCGTTCTAGTAAGCGCAATCTCGGCCTGCACCCACTTGTCGGCCCTCGATCGAGGGGCGTGGATCCATGCTTA TATAAGGAAGAAGAAGCTGAAGATCAATGTCATTCTTGGGACGACCCTTATCGACATGCACATGAAATTCGGCTCGGTACAGAATGCAATGGAGGTTTTC GACGGAATGGATGAGAAAGGTGTTTCGACCTGGAATGCTCTGATTCTCGGTCTGGCAATGAATGGTTCGGTGAAGGAATCACTAGAGACGTTTTCCGAAA TGAAGGAATCCGGTATCGTGCCGAATGAAGTAACATTTCTGGCTGTTCTTGGTGCTTGTAGACACATGGGACTTGTTGAGGAAGGGCGCCGCCATTTCGA CTCCATGATCGAGAAGCATAAGATCGAACCTACTGTTAAGCACTACGGGTGCATGGTTGATCTTCTCGGACGTGCAGATAAGCTACGAGAAGCGGAAGAA CTCATCGCTAGGATGCCTATGCCTCCTGACGTCTCAACATGGGGTGCTTTGCTCGGAGCTTGTAAGAAACACGAAGACCACGTGATTGGAGAACGAGTAG GAAGGAAACTAATCGAACTTCAACCGGAGCACGATGGTTTCCACGTACTGCTGTCAAACATATACGCTTCGAGAGGGGATTGGGACGACGCCAGTGATAT TCGAGGAAGGATGAGGAAGCATAAGGTGACGAAAGTGCCAGGTCGCAGCATGATCGAAGCGAACGGAATAGTTCACGAGTTCTTTGCAGGTGCAGATGAA TAA
AA sequence Show only first row Show all	>Lus10031430 pacid=23155986 polypeptide=Lus10031430 locus=Lus10031430.g ID=Lus10031430.BGIv1.0 annot-version=v1.0 MVFNGVSVDEIVLISALSACAHSLVVKMGKSIHALAIKVGIDLYVNLQNALIHMYSVCGELVAAEKLFGYGSCLDLISWNSMISGYLKCGEIDKARSLFN SMPRKDTVSWNVMISGYAQHDRFADALALFQDMLNDNILPDDTVLVSAISACTHLSALDRGAWIHAYIRKKKLKINVILGTTLIDMHMKFGSVQNAMEVF DGMDEKGVSTWNALILGLAMNGSVKESLETFSEMKESGIVPNEVTFLAVLGACRHMGLVEEGRRHFDSMIEKHKIEPTVKHYGCMVDLLGRADKLREAEE LIARMPMPPDVSTWGALLGACKKHEDHVIGERVGRKLIELQPEHDGFHVLLSNIYASRGDWDDASDIRGRMRKHKVTKVPGRSMIEANGIVHEFFAGADE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031430 [exp]	0	1
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10012736 [exp]	7.4	0.8461
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10017243 [exp]	8.1	0.8357
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10015091 [exp]	13.7	0.8024
AT4G24110			unknown protein		Lus10001676 [exp]	14.9	0.8674
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Lus10022724 [exp]	16.8	0.8558
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10038977 [exp]	18.0	0.8604
AT1G49230			RING/U-box superfamily protein...		Lus10005816 [exp]	18.4	0.7988
AT2G28360			SIT4 phosphatase-associated fa...		Lus10016089 [exp]	20.6	0.8613
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10042951 [exp]	23.7	0.8405
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10009183 [exp]	34.4	0.8172

Compare expression of checked genes

Lus10031430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.