Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56560 936 / 0 A/N-InvA alkaline/neutral invertase A, Plant neutral invertase family protein (.1) AT3G05820 919 / 0 At-A/N-InvH Arabidopsis alkaline/neutral invertase H, alkaline/neutral invertase H, invertase H (.1) AT3G06500 871 / 0 A/N-InvC alkaline/neutral invertase C, Plant neutral invertase family protein (.1) AT5G22510 762 / 0 INV-E, At-A/N-InvE Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) AT4G09510 575 / 0 A/N-InvI, CINV2 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) AT1G35580 573 / 0 A/N-InvG, CINV1 alkaline/neutral invertase G, cytosolic invertase 1 (.1.2.3) AT1G22650 572 / 0 A/N-InvD alkaline/neutral invertase D, Plant neutral invertase family protein (.1) AT4G34860 570 / 0 A/N-InvB alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) AT1G72000 558 / 0 A/N-InvF alkaline/neutral invertase F, Plant neutral invertase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010900 [exp] 1306 / 0 AT1G56560 937 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Lus10037817 [exp] 913 / 0 AT3G06500 927 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10017095 [exp] 912 / 0 AT3G06500 933 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10043375 [exp] 773 / 0 AT5G22510 918 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10019532 [exp] 768 / 0 AT5G22510 922 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10034525 [exp] 580 / 0 AT4G34860 943 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10033144 [exp] 579 / 0 AT4G34860 944 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10006078 [exp] 570 / 0 AT4G09510 1001 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10014824 [exp] 570 / 0 AT4G09510 987 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G010800 [exp] 1003 / 0 AT1G56560 946 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.013G006600 [exp] 1003 / 0 AT1G56560 945 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.008G101500 [exp] 922 / 0 AT3G06500 911 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Potri.008G024100 [exp] 764 / 0 AT5G22510 894 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.010G236100 [exp] 751 / 0 AT5G22510 897 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.004G186500 [exp] 744 / 0 AT5G22510 913 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.009G129000 [exp] 573 / 0 AT4G34860 972 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.004G167500 [exp] 573 / 0 AT4G34860 994 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.005G239400 [exp] 567 / 0 AT4G34860 927 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.019G082000 [exp] 565 / 0 AT4G09510 981 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10031431 pacid=23155794 polypeptide=Lus10031431 locus=Lus10031431.g ID=Lus10031431.BGIv1.0 annot-version=v1.0 ATGACCGCTCTCCGCTTCCTCGGCCGTGCCACGGCAATGAAACCTTCTTCCAGATTCATCACCTCCCTCACCCGCAATTTCAAATCAACCCGCTTCAGTT TCGAGAGAACCAACAACATCAATTCCGGCCGAATCAGCACAATCAGCCATGGCTGTAGCCAAATTAGGGTTACGCCGTTCACGACGACCGTCCTCCACCG TCATCCGGCGTCGTTTCTGAACAAAGACCGCTCATCGTTCGCCGCCGTGGCGAACCTTTCGTCCTGGGTGAGGCAGCAGCACCACTCGACGTCGGTGGAG ACGAGGGTGAACGACAGCAATTTCGAGAGGATCTATGTCCAGAATGGGATTGTCGACAAGCCGTTGGTTGTCGAGAGGATTGACATAGACGAGAACATAC GAGGAGGAGGGGATGTTGTTGAGAAAGTTTCTGATGAGGTTGGTGGTGTTGAGGTTGCTGCGGGGAAGAATCTTCGGGAAGAAACGGATTTGGAGAAAGA GGCGTGGAAGCTGTTGAATGATTCCGTGGTTAGTTATTGTGGGAGTCCCGTTGGTACCATGGCTGCTAATGATCCTGGAGATACCATGCCTTTGAATTAT GATCAGGTTTTCATTCGCGATTTCGTACCAAGCGCTCTGGCTTTCTTGCTCAGAGGTGAAGGAGAGATCGTCAGGAACTTCCTGCTCCATAATCTGCAGT TGCAGAGCTGGGAGAAAACAGTAGATTGCTATAGCCCTGGTCAAGGTCTGATGCCAGCTAGTTTCAAGGTCAGAACTGTGCCTCTTGATGGTAACAAATT CGAAGAAGTTCTTGATCCAGATTTTGGCGAATCAGCTATCGGTCGGGTTGCACCCGTGGACTCGGGGTTGTGGTGGGTGATTTTGTTGAAGGCGTACGGG AGAATCACGGGTGATTACACGTTGCAAGAGAGGGTTGATGTGCAGACAGGCATCAAGCTAATCTTGAACTTGTGCTTGGCCGATGGTTTCGATATGTTCC CTACTCTGTTAGTCACCGATGGTTCCTGCATGATAGATCGCCGGATGGGTATTCATGGCCATCCTCTTGAAATCCAGGCATTGTTCTACTCTGCACTTCG AAGTGGTCGAGAGATGCTTGCTGTAACCGACGGTTCGAAGAATCTGGTAAGGGCTATAAACAACAGACTCAGTGCCCTGTCCTTCCACATTAGGGAGTAT TACTGGGTGGACATGAAAAAGATCAATGAGATCTACAGGTACAAAACAGAAGAGTATTCAATGGACGCCACCAACAAGTTCAACATCTACCCTGAACAAA TCCCCCACTGGCTTATGGATTGGATTCCGGAGTCAGGCGGGTATCTTATGGGAAATTTGCAGCCTGCTCATATGGATTTCAGGTTCTTCACCTTAGGGAA TCTCTGGTCCGTAATTTCGTCCTTGGGTACCCCGAAACAGAACGAAGCTATACTGAACATGATTGATGAAAAATGGGATGACATAGTCGGAGACATGCCT CTTAAGATATGTTTCCCCGCTATTGAGCACGAGGAATGGCGTATCGTCACCGGAAGTGACCCTAAGAACACGCCTTGGTCATATCACAATGGTGGATCAT GGCCAACCCTTCTCTGGCAGTTCACCTTAGCATGCATCAAGATGGGCAAAATCGAACTAGCACAGAAGGCAGTCAGCATGGCTGAGGCGAGACTCGGCGC AGACAAGTGGCCTGAATATTACGACACCCGAAGGGGGAAATTCATCGGGAAGCAAGCTCGACTCTACCAGACTTGGACAATCGCAGGGTTCCTGACATCA AAAATCCTCCTCGAAAATCCAGAAAAGGCTTCTCTGTTGTTCTGGGAGGAAGACTACGAACTCCTCGAGACTTGCGTCTGTGCATTGAACAAGACTGGCC GCAAGAAATGCTCGCGAGTAGCTGCCAAGTCCCAGATTCTCGTCTAG
AA sequence Show only first row Show all	>Lus10031431 pacid=23155794 polypeptide=Lus10031431 locus=Lus10031431.g ID=Lus10031431.BGIv1.0 annot-version=v1.0 MTALRFLGRATAMKPSSRFITSLTRNFKSTRFSFERTNNINSGRISTISHGCSQIRVTPFTTTVLHRHPASFLNKDRSSFAAVANLSSWVRQQHHSTSVE TRVNDSNFERIYVQNGIVDKPLVVERIDIDENIRGGGDVVEKVSDEVGGVEVAAGKNLREETDLEKEAWKLLNDSVVSYCGSPVGTMAANDPGDTMPLNY DQVFIRDFVPSALAFLLRGEGEIVRNFLLHNLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDGNKFEEVLDPDFGESAIGRVAPVDSGLWWVILLKAYG RITGDYTLQERVDVQTGIKLILNLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRSGREMLAVTDGSKNLVRAINNRLSALSFHIREY YWVDMKKINEIYRYKTEEYSMDATNKFNIYPEQIPHWLMDWIPESGGYLMGNLQPAHMDFRFFTLGNLWSVISSLGTPKQNEAILNMIDEKWDDIVGDMP LKICFPAIEHEEWRIVTGSDPKNTPWSYHNGGSWPTLLWQFTLACIKMGKIELAQKAVSMAEARLGADKWPEYYDTRRGKFIGKQARLYQTWTIAGFLTS KILLENPEKASLLFWEEDYELLETCVCALNKTGRKKCSRVAAKSQILV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56560		A/N-InvA	alkaline/neutral invertase A, ...		Lus10031431 [exp]	0	1
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10024558 [exp]	7.7	0.8790
AT1G60995			unknown protein		Lus10033791 [exp]	8.9	0.8729
AT3G22260			Cysteine proteinases superfami...		Lus10010459 [exp]	11.8	0.8628
AT2G01690			ARM repeat superfamily protein...		Lus10003702 [exp]	12.7	0.8478
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	24.6	0.8704
AT1G22870			Protein kinase family protein ...		Lus10007901 [exp]	24.7	0.8133
AT3G54850		ATPUB14	plant U-box 14 (.1)		Lus10038699 [exp]	25.5	0.8053
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10002826 [exp]	26.4	0.8636
AT5G11700			unknown protein		Lus10011144 [exp]	28.5	0.8362
AT1G70160			unknown protein		Lus10010721 [exp]	29.3	0.8567

Compare expression of checked genes

Lus10031431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.