Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56590 705 / 0 ZIP4 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) AT1G60780 178 / 2e-51 HAP13 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) AT1G10730 172 / 4e-49 Clathrin adaptor complexes medium subunit family protein (.1) AT5G46630 150 / 5e-41 Clathrin adaptor complexes medium subunit family protein (.1.2) AT4G24550 139 / 1e-36 Clathrin adaptor complexes medium subunit family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010899 [exp] 843 / 0 AT1G56590 704 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Lus10004626 [exp] 174 / 5e-50 AT1G60780 827 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10042083 [exp] 174 / 1e-49 AT1G60780 779 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10026688 [exp] 168 / 2e-47 AT1G60780 813 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10040086 [exp] 157 / 2e-43 AT5G46630 853 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10018088 [exp] 161 / 4e-43 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10030961 [exp] 145 / 7e-39 AT5G46630 837 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10000107 [exp] 142 / 2e-38 AT1G60780 572 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10024548 [exp] 133 / 2e-34 AT4G24550 804 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G010600 [exp] 774 / 0 AT1G56590 716 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.013G006400 [exp] 767 / 0 AT1G56590 712 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.008G187600 [exp] 179 / 8e-52 AT1G60780 831 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.010G044700 [exp] 179 / 1e-51 AT1G60780 834 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.003G090800 [exp] 154 / 2e-42 AT5G46630 831 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.001G143800 [exp] 150 / 5e-41 AT5G46630 816 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.002G105100 [exp] 132 / 2e-34 AT4G24550 817 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.010G028600 [exp] 43 / 0.0003 AT2G20790 790 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0448 [flax] [poplar] Cargo_bd_muHD PF00928 [flax] [poplar] Adap_comp_sub Adaptor complexes medium subunit family
Representative CDS sequence Show only first row Show all	>Lus10031432 pacid=23155858 polypeptide=Lus10031432 locus=Lus10031432.g ID=Lus10031432.BGIv1.0 annot-version=v1.0 ATGTTGCAGTGCATCTTCCTCCTATCTGATTCCGGAGAGGTGATGCTGGAGAAGCAGCTGACTGGGAATCGAGTGGACAGATCCATCTGCGCTTGGTTCT GGGATCAACTCCTCTCCCATGGCGATTCATTTAAGCAACAACCTGTGATTGCTTCTCCAACACACTACCTGTTCCAAGTTGTTCGTGAAGGGATCACTTT CCTGGCTTGCACACAAGTTGAGATGCCTCCTTTGATGGCTATCGAGTTCCTTGGCAGGGTAGCTGACGTCCTCTCAGATTACCTTGAAGGCTTGAACGAA GATGTCTTAAAGGATAACTTCATCATTGTCTACGAGTTGTTGGATGAGATGATAGATAATGGCTTCCCTTTGACAACTGAACCTAACATACTCAGAGAGA TGATAGCACCGCCGAACATCGTTAGCAAGATGTTAAGTGTCGTGACTGGTAATAGCTCGAACGTCAGCGAAACTCTTCCGGGAGCTACCTCTTCTTGTGT CCCGTGGAGGACAACCGACATAAAGTATGCTAATAATGAAGTTTATGTCGATCTCGTTGAGGAAATGGATGCCATTATAAACAGGGATGGTGTGTTGGTA AAATGCGAAGTCTATGGCGAAGTCCAAGTGAATTCGCATATTACTGGCGTTCCTGATTTGACTCTTTCCTTTATTAATCCTTCCATGCTGGACGATGTGA GATTTCATCCTTGTGTACGTTATCGGCCTTGGGAAGCTAGCCAGATACTGTCTTTCGTCCCTCCTGATGGCCAGTTTAAGCTAATGAGTTACAGGATACG GAAGTTGAAAAGTGTCCCCCTCTATGTGAAGCCGCAGATTACATCAGATGGCGGAACATGTCGCATTAGTGTGATGGTTGGAATCAGAAACGATCCTGGA AAGGCTATCGACTCCATATCGGTGCAGTTTCAGCTGCCTTCTTGTGTGTTATCTTCTGATCTATCTGCAAATCATGGAGTGGTGAATGTCCTCTCTAATA AGACATGTGTATGGTCGATCGACCGAATACCGAAAGATCGAGCTCCTTCATTATCCGGAACACTAGTGCTGGAGAGCAGCTTGGAGCGTCTACATGTGTT TCCCACATTTCAAGTGGGGTTCAGAATACAAGGCGTCGCCCTTTCAGGCCTGCAGATAGATAGACTGGAGCTCAAGGTTATACCAAACCGTCTGTACAAA GGTTTTCGAGCTCTAACACGAGGCGGACGTTACGAAGTGAGATCGTAG
AA sequence Show only first row Show all	>Lus10031432 pacid=23155858 polypeptide=Lus10031432 locus=Lus10031432.g ID=Lus10031432.BGIv1.0 annot-version=v1.0 MLQCIFLLSDSGEVMLEKQLTGNRVDRSICAWFWDQLLSHGDSFKQQPVIASPTHYLFQVVREGITFLACTQVEMPPLMAIEFLGRVADVLSDYLEGLNE DVLKDNFIIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSETLPGATSSCVPWRTTDIKYANNEVYVDLVEEMDAIINRDGVLV KCEVYGEVQVNSHITGVPDLTLSFINPSMLDDVRFHPCVRYRPWEASQILSFVPPDGQFKLMSYRIRKLKSVPLYVKPQITSDGGTCRISVMVGIRNDPG KAIDSISVQFQLPSCVLSSDLSANHGVVNVLSNKTCVWSIDRIPKDRAPSLSGTLVLESSLERLHVFPTFQVGFRIQGVALSGLQIDRLELKVIPNRLYK GFRALTRGGRYEVRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10031432 [exp]	0	1
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10040296 [exp]	1.4	0.8598
AT1G08110			lactoylglutathione lyase famil...		Lus10021429 [exp]	3.5	0.8641
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10013754 [exp]	5.7	0.8256
AT4G00525			unknown protein		Lus10030386 [exp]	8.1	0.8195
AT2G07715			Nucleic acid-binding, OB-fold-...		Lus10037433 [exp]	8.1	0.7805
AT5G61970			signal recognition particle-re...		Lus10043202 [exp]	8.3	0.8275
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10018001 [exp]	9.5	0.8104
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10032550 [exp]	12.6	0.8103
AT5G49540			Rab5-interacting family protei...		Lus10016182 [exp]	12.7	0.7659
AT2G39960			Microsomal signal peptidase 25...		Lus10014838 [exp]	14.2	0.7832

Compare expression of checked genes

Lus10031432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.