Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09330 277 / 5e-96 ECHIDNA, ECH unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010898 [exp] 321 / 3e-113 AT1G09330 313 / 2e-110 unknown protein Lus10010063 [exp] 262 / 4e-90 AT1G09330 308 / 1e-108 unknown protein Lus10004514 [exp] 224 / 1e-74 AT1G09330 269 / 2e-92 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G010400 [exp] 297 / 6e-104 AT1G09330 328 / 2e-116 unknown protein Potri.013G006250 [exp] 293 / 2e-102 AT1G09330 330 / 2e-117 unknown protein Potri.002G191700 [exp] 201 / 2e-66 AT1G09330 240 / 6e-82 unknown protein Potri.014G116900 [exp] 128 / 1e-37 AT1G09330 158 / 1e-49 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05832 [flax] [poplar] DUF846 Eukaryotic protein of unknown function (DUF846)
Representative CDS sequence Show only first row Show all	>Lus10031433 pacid=23155941 polypeptide=Lus10031433 locus=Lus10031433.g ID=Lus10031433.BGIv1.0 annot-version=v1.0 ATGTTACTTGAGTTGTCTCAATCTTCTTTGGAGATCATAGTTGTGATGGTTATCTGCAACGAAACAGGATCCGATTCTTATTCTCCTCCTGAAGAGAATT ATGCCAACCCGAGAACTTGCCTCTTTCATGTTCTCTTCAAGGCTGCCTCGTTGGCTTTCTACATACTGTCAGCCCTCTTCATCAACAATTTCGTCATAAT CTTTGTGGTCACTGTTCTTCTTGCTGCACTGGACTTCTGGGTGGTCAAGAACGTCAGTGGCAGGATTCTCGTAGGTCTCAGGTGGTGGAATGAGATAAAC GACCTTGGCGAGAGCGTATGGAGATTCGAATCACTTGACCAAGAGTCATTGGCCCGTATGAACAAGAAAGACGCTTGGCTCTTCTGGTGGACCCTCTATC TCACTGCGGTTGCGTGGGTTTTCCTTGGGATATTCTCAGTGATAAGGTTCCAAGCTGATTACTGCCTCATTACAGGGGTGTGTATGACTCTAAGTATTGC AAACATTATCGGCTTCACCAAGTGCCGCAAAGATGCAAAGAGGCAGCTCCAGCAGTTTGCGACGCAGACGATTACAAGCCGAGTTTCGTCCACCATACAA TCGGCATTCAGTGTTGTGTGA
AA sequence Show only first row Show all	>Lus10031433 pacid=23155941 polypeptide=Lus10031433 locus=Lus10031433.g ID=Lus10031433.BGIv1.0 annot-version=v1.0 MLLELSQSSLEIIVVMVICNETGSDSYSPPEENYANPRTCLFHVLFKAASLAFYILSALFINNFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIN DLGESVWRFESLDQESLARMNKKDAWLFWWTLYLTAVAWVFLGIFSVIRFQADYCLITGVCMTLSIANIIGFTKCRKDAKRQLQQFATQTITSRVSSTIQ SAFSVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10031433 [exp]	0	1
AT3G52620			unknown protein		Lus10022704 [exp]	1.4	0.6606
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10027248 [exp]	15.0	0.5632
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018098 [exp]	17.4	0.5623
					Lus10013672 [exp]	19.5	0.5613
AT1G07175			unknown protein		Lus10040655 [exp]	20.0	0.5558
					Lus10022068 [exp]	29.8	0.5309
					Lus10008440 [exp]	30.9	0.5399
					Lus10020856 [exp]	31.5	0.5274
AT4G11220		RTNLB2, BTI2	Reticulan like protein B2, VIR...		Lus10027546 [exp]	35.3	0.5194
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10003652 [exp]	39.6	0.5139

Compare expression of checked genes

Lus10031433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.