Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47180 526 / 0 ATGOLS1 galactinol synthase 1 (.1) AT1G56600 518 / 0 ATGOLS2 galactinol synthase 2 (.1) AT1G09350 500 / 2e-179 ATGOLS3 galactinol synthase 3 (.1) AT1G60470 470 / 2e-167 ATGOLS4 galactinol synthase 4 (.1) AT4G26250 444 / 3e-157 ATGOLS6 galactinol synthase 6 (.1) AT5G23790 433 / 6e-153 ATGOLS5 galactinol synthase 5 (.1) AT5G30500 430 / 9e-152 GolS10 galactinol synthase 10, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G60450 424 / 3e-149 ATGOLS7 galactinol synthase 7 (.1) AT1G77130 86 / 4e-18 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT3G18660 86 / 5e-18 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010897 [exp] 618 / 0 AT2G47180 533 / 0.0 galactinol synthase 1 (.1) Lus10029145 [exp] 466 / 2e-165 AT2G47180 493 / 1e-176 galactinol synthase 1 (.1) Lus10013020 [exp] 321 / 2e-108 AT2G47180 336 / 3e-114 galactinol synthase 1 (.1) Lus10018922 [exp] 90 / 1e-19 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10028623 [exp] 90 / 2e-19 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10033485 [exp] 84 / 1e-17 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10029932 [exp] 82 / 1e-16 AT1G54940 527 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10020890 [exp] 81 / 1e-16 AT3G18660 828 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10021731 [exp] 81 / 2e-16 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G006800 [exp] 535 / 0 AT1G56600 539 / 0.0 galactinol synthase 2 (.1) Potri.002G191600 [exp] 531 / 0 AT2G47180 565 / 0.0 galactinol synthase 1 (.1) Potri.014G116800 [exp] 528 / 0 AT2G47180 568 / 0.0 galactinol synthase 1 (.1) Potri.013G005800 [exp] 525 / 0 AT1G56600 543 / 0.0 galactinol synthase 2 (.1) Potri.010G150400 [exp] 497 / 2e-178 AT2G47180 519 / 0.0 galactinol synthase 1 (.1) Potri.008G101000 [exp] 480 / 1e-171 AT2G47180 507 / 0.0 galactinol synthase 1 (.1) Potri.008G189400 [exp] 471 / 6e-168 AT1G60470 545 / 0.0 galactinol synthase 4 (.1) Potri.010G042000 [exp] 465 / 2e-165 AT1G60470 534 / 0.0 galactinol synthase 4 (.1) Potri.013G005900 [exp] 352 / 2e-122 AT1G56600 363 / 2e-127 galactinol synthase 2 (.1) Potri.007G107200 [exp] 87 / 1e-18 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10031434 pacid=23156068 polypeptide=Lus10031434 locus=Lus10031434.g ID=Lus10031434.BGIv1.0 annot-version=v1.0 ATGGCACCTGAGATCCCACCAACTGCCAACAACGCCGCACTGGCCACCAAGACAGCCGCCGCCGCTGGCTTGTTGAAGCAGCCGAGTATATCCAAGTGCG CCTACGTGACTTTCCTCGCCGGAAACGGCGACTACGTCAAAGGAGTCGTCGGGCTCGCTAAGGGGCTGAGGAAAGTCAAGAGCAAGTACCCTTTAGTGGT TGCTGTCTTGCCGGACGTCCCTGAGGAACACCGCCGGATCCTGGTTTCTCAAGGTTGTATCGTCCGGGAGATCGACCCGGTTTACCCGCCCGAAAACCAG ACCCAGTTTGCCATGGCGTACTACGTCATCAACTACTCCAAGCTCCGTATTTGGAAGTTTGTGGAGTACAGCAAGATGATATACTTGGACGGCGACATCC AAGTCTTCTCAAACATTGACCACCTCTTTGACCTCCCGGACGGCCGTTTCTACGCCGTGATGGACTGCTTCTGCGAGAAGACGTGGAGCCACACTCCACA GTACAAAATCGGTTACTGCCAACAGAGGCCCGATAAGGTCAAGTGGACCCCGGAGCTAGGCCCAAAGCCGGCACTCTACTTCAACGCCGGAATGTTCGTC TACGAGCCCAGCTTAGCAATCTACGACAAGCTCCTGGAAACTCTGAAGGTCGCCCCTACGACGCCGTTTGCGGAGCAGGACTTCCTCAACTCCTTCTTCA AAGACATCTACAGGCCGATCCCGTCTTATTACAATCTCGTCCTCGCCATGCTGTGGCGCCACCCGGAGAATGTCGAGCTGGAGAAGGTCAAAGTCGTCCA TTACTGCGCTGCTGGATCGAAGCCGTGGAGGTATACAGGGGAGGAGGAGAACATGGATAGGGAGGATATTAAGATGCTGGTGAAGAAGTGGTGGGACGTT TACGACGACGAGTCGTTGGATTACTGGAACTGGGTTGAGGCGACGGAGGTGACGGTGGAGGCGGTGAAAATGCAGCCGTTTCTGGCGGCGCTGTCGGAGG CTGGAGTTGTGCATTACGTTACGGCGCCGTCTGCTGCTTGA
AA sequence Show only first row Show all	>Lus10031434 pacid=23156068 polypeptide=Lus10031434 locus=Lus10031434.g ID=Lus10031434.BGIv1.0 annot-version=v1.0 MAPEIPPTANNAALATKTAAAAGLLKQPSISKCAYVTFLAGNGDYVKGVVGLAKGLRKVKSKYPLVVAVLPDVPEEHRRILVSQGCIVREIDPVYPPENQ TQFAMAYYVINYSKLRIWKFVEYSKMIYLDGDIQVFSNIDHLFDLPDGRFYAVMDCFCEKTWSHTPQYKIGYCQQRPDKVKWTPELGPKPALYFNAGMFV YEPSLAIYDKLLETLKVAPTTPFAEQDFLNSFFKDIYRPIPSYYNLVLAMLWRHPENVELEKVKVVHYCAAGSKPWRYTGEEENMDREDIKMLVKKWWDV YDDESLDYWNWVEATEVTVEAVKMQPFLAALSEAGVVHYVTAPSAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10031434 [exp]	0	1
AT1G17870		ATEGY3	ethylene-dependent gravitropis...		Lus10006140 [exp]	1.0	0.9591
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023423 [exp]	1.4	0.9366
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10003698 [exp]	4.4	0.8888
AT2G24580			FAD-dependent oxidoreductase f...		Lus10042437 [exp]	4.9	0.9004
AT4G15248	CO		B-box type zinc finger family ...		Lus10015097 [exp]	6.0	0.9212
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Lus10030080 [exp]	7.1	0.8534
AT1G66080			unknown protein		Lus10010967 [exp]	7.9	0.9168
AT3G24500		MBF1C, ATMBF1C	multiprotein bridging factor 1...		Lus10034592 [exp]	8.7	0.9236
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Lus10021127 [exp]	9.4	0.9023
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10041207 [exp]	9.8	0.9172

Compare expression of checked genes

Lus10031434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.