Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09380 427 / 1e-149 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 254 / 4e-81 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 238 / 3e-75 WAT1 Walls Are Thin 1 (.1.2) AT2G40900 232 / 7e-73 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 231 / 8e-73 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 229 / 5e-72 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 228 / 1e-71 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 227 / 4e-71 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08300 221 / 5e-69 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 219 / 9e-68 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001523 [exp] 677 / 0 AT1G09380 446 / 6e-157 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020987 [exp] 268 / 2e-86 AT1G25270 301 / 8e-100 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 265 / 2e-85 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 243 / 9e-77 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 240 / 1e-75 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 243 / 3e-75 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 239 / 3e-75 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020819 [exp] 229 / 8e-72 AT1G25270 262 / 6e-85 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 226 / 1e-70 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G006600 [exp] 465 / 2e-164 AT1G09380 477 / 2e-169 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 254 / 3e-81 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 251 / 4e-80 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 249 / 2e-79 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 249 / 3e-79 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G108600 [exp] 236 / 1e-74 AT1G25270 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 232 / 7e-73 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.008G051400 [exp] 222 / 3e-69 AT5G13670 405 / 4e-141 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 222 / 3e-69 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 221 / 8e-69 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10031437 pacid=23155901 polypeptide=Lus10031437 locus=Lus10031437.g ID=Lus10031437.BGIv1.0 annot-version=v1.0 ATGGAGATGGGGACGATGGAAGGTATGTTGCCGATGGTCGCAATGGTGCTGGTTCAAATCGGATACGCGGGGATGAACGTCATGGCTAAGATAGCTATGA ACTCCGGGATGAAGCCTCTTGTTCTCGTTGCTTACCGCCAGCTCTTCGCCACTCTTTCTCTCGCTCCCTTTGCCTTCTTCCTTGAGAGGAAGACCATACC GGAGATCAATGGCCCGCTGTTGTGGAACATTTTCTTGTGCTCTCTCACCGGAGTGACGGGTAACCAAGTTCTCTACTTCATCGGATTGCAGCTATCAACA CCGACCATCGGTTGCGCCTTGACCAACGTCTTACCCGCTCTCACCTTCATCCTCGCCGTCATTTTCAGACAAGAATCAGTGGGAATCAGGAGGATATCAG GACAGGCGAAGGTGGCGGGAACAGCAGCATGCGTAGGAGGTGCAATGCTGCTGTCGTTTTACCACGGCCACGTCATCAAGATCCCCGAGTCAAGCATCCA CCTCATCCACGGCCAAGATACTAGTACTAGCAGTACTAGCAGTACGAGTTCTGGCGGTTCGAACGTGTTCTTGGGACCGTTGTTGATTATGGGTAGCGCG GTGTCGTGGGCTCTATGGTTCGTTTTGCAGGCTAGAGTCAGCGAGAGTTTTCCTGCGCCTTACACCAGCACTTGGCTGATGTGCTTCATGGGCAGTCTGC AGTGTTTCGCCATCGCTTTGGGTCCGAACCACGAGCTCGAGCAGTGGTCTTTGCAATCTCCTGACCGCCTCGTCGCTGCCATTTACGCGGGGATAGTGTG CTCTGCGCTAGCGTTTTTGCTGACGTCGTGGAGCATACAAAGGAAAGGAGCTCTCTACGTATCGGTGTTCAACCCTCTCTTGCTCGTGGCGGTCGCAGTT CTCAGCTGGGGCGTCCTCGGCGAAAAACTCTTCCTTGGAACGTTGGTGGGTGCAGTTTTGATCATCGGGGGCCTGTACTTGGTGCTGTGGGGAAAGGACA AGGAAGGAAAGTTGATGGGTGATCAAGAAGTACTGGATCATCGTCAGTTGATGGTCTTCAGGGCGGTGGTTGATCGGGATGACGTGGAGTCTCAGTCGCC CGCGGCGGCCGGAGGGGATCGTGATCAAGCTAATGGGAAAACCATGGAATAA
AA sequence Show only first row Show all	>Lus10031437 pacid=23155901 polypeptide=Lus10031437 locus=Lus10031437.g ID=Lus10031437.BGIv1.0 annot-version=v1.0 MEMGTMEGMLPMVAMVLVQIGYAGMNVMAKIAMNSGMKPLVLVAYRQLFATLSLAPFAFFLERKTIPEINGPLLWNIFLCSLTGVTGNQVLYFIGLQLST PTIGCALTNVLPALTFILAVIFRQESVGIRRISGQAKVAGTAACVGGAMLLSFYHGHVIKIPESSIHLIHGQDTSTSSTSSTSSGGSNVFLGPLLIMGSA VSWALWFVLQARVSESFPAPYTSTWLMCFMGSLQCFAIALGPNHELEQWSLQSPDRLVAAIYAGIVCSALAFLLTSWSIQRKGALYVSVFNPLLLVAVAV LSWGVLGEKLFLGTLVGAVLIIGGLYLVLWGKDKEGKLMGDQEVLDHRQLMVFRAVVDRDDVESQSPAAAGGDRDQANGKTME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09380			nodulin MtN21 /EamA-like trans...		Lus10031437 [exp]	0	1
AT2G25270			unknown protein		Lus10014341 [exp]	10.2	0.7350
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10025986 [exp]	10.5	0.7387
AT1G02790		PGA4	polygalacturonase 4 (.1)		Lus10016823 [exp]	10.7	0.6432
AT1G72940			Toll-Interleukin-Resistance (T...		Lus10041605 [exp]	11.1	0.7228
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10036959 [exp]	12.6	0.6868
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10007102 [exp]	13.6	0.7108
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10038471 [exp]	17.6	0.7366
					Lus10010582 [exp]	20.1	0.6775
					Lus10013529 [exp]	27.2	0.6550
					Lus10023352 [exp]	33.2	0.6487

Compare expression of checked genes

Lus10031437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.