Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09390 407 / 9e-140 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G56670 389 / 1e-132 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G62280 300 / 8e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G54790 266 / 3e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT3G05180 234 / 3e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G56700 223 / 4e-70 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3) AT1G67830 219 / 2e-66 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1) AT3G27950 211 / 2e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G14450 211 / 2e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G26430 205 / 7e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001522 [exp] 583 / 0 AT1G09390 459 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10001521 [exp] 327 / 5e-109 AT1G56700 312 / 2e-107 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3) Lus10029638 [exp] 258 / 4e-81 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029980 [exp] 255 / 5e-80 AT1G54790 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029639 [exp] 251 / 9e-79 AT1G54790 421 / 4e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10008784 [exp] 224 / 4e-68 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10032094 [exp] 223 / 8e-68 AT5G14450 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014592 [exp] 217 / 2e-65 AT5G14450 573 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006224 [exp] 200 / 5e-56 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G006500 [exp] 442 / 3e-153 AT1G09390 506 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G191100 [exp] 325 / 2e-107 AT1G09390 400 / 5e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G005100 [exp] 254 / 4e-82 AT1G56700 344 / 1e-121 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3) Potri.005G005800 [exp] 251 / 6e-81 AT1G56700 335 / 5e-118 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3) Potri.002G216000 [exp] 250 / 3e-78 AT1G54790 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G038800 [exp] 247 / 5e-77 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.013G026300 [exp] 246 / 1e-76 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.010G047900 [exp] 228 / 2e-69 AT3G26430 504 / 1e-179 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G342600 [exp] 222 / 2e-67 AT5G14450 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G185500 [exp] 221 / 6e-67 AT3G26430 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0379 [flax] [poplar] PgaPase PF01470 [flax] [poplar] Peptidase_C15 Pyroglutamyl peptidase CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10031438 pacid=23155933 polypeptide=Lus10031438 locus=Lus10031438.g ID=Lus10031438.BGIv1.0 annot-version=v1.0 ATGGCGGCAGGATCTGGACCACTCCTTGCCATCTTCCTCCTCTTCCAGCTGCTCTGCATCTCCTTATCTGCTTCTGTACAAGCTGCTGGTGAGCAGGCCC ATTGCAGAAGGCCGCCGGTGATCTTCAACTTCGGAGATTCCAACTCAGACACTGGAGCTCTCCTCGCCGGACTCGGATTCCCTATCAACCCACCTAACGG CCGTGCTTTCTTCGGCGGGGGGTGCCAGAGCCTGAACACAACATTCCTGACACCATACATGGACTCCCTATCAGGCTCCAAGTTCACCAACGGCGCAAAC TTTGCAGTAGTCGGATCCTCAACCCTCCCCAAGTTCGTCCCGTTCTCCCTCCACATCCAGCTAATGCAGTTCCTCCACTTCAAATCCCGATCCCTCCAGC TCCCATCCCTCAGCTTCACCCCCCAAGTTTTCCAGGACGCCCTCTACAGCATCGACATTGGGCAGAACGACATCGCAGATTCCTTCTCCAAGAACATGAC TTACGCCGAAGTGGTGAAACGAATCCCTTTGGTTCTTTCCGAGATACACGATGCTGTGAAGAGGTTGTATGAAGATGGTGGTGGGAGGAAGTTCTGGATA CATAATACAGGGCCGTTGGGATGCTTGCCGCAGAAGCTGGCTATGGTTAAGGGTGATCATCAGGGTTTTTTGGATGGTGCTGGGTGTATAACTAGTTACA ATGAAGCTGCGAAGCTTTTCAATGAAGGGCTGAGGAGGTTATGTGGGAGGTTGCGGTCTGAGTTGAAGGGTGCGACGGTTGTTTATATTGATATCTACTC TGCCAAGTACGATCTGATCGCGAATGCCACTAAGTACGGGTTTGGAAGTAGTCCGCTGAGGGCGTGCTGTGGGTTCAGAGGGGCGCCGTATAACTACGAC ATAAGGGTGCCGTGTGGACAGCCGGGGAGCGATGCTTGCAGGGAAGGGAGTCGATCCGTGAGCTGGGATGGGATTCATTACACTGATGCTGCTAACTCTT TCGTGGCTTCCAAGGTGCGTTTGATGGGATCAGAAGGAACGGTTCCTGGGACTGAAATCTCAGAAAAGGAAGCGCCGTGCATAACAGTCCATGTCACAGG GTTCAAAAGATTCCATGGAGTTTCCGAGAATCCAACGGAGGCCATCGTTGGCAACCTTGAGGAGTATATGGGGAAGAATGGGATGCCGAAAGGTCTAGTC TTGGGGAGTTGTCATGTTCTTGAGACTGCTGGACAAGGCGCTGTGGCTCCTCTTTACCAGACATTGCAGTCTGCCATACCTCCCAACAAGGGCTCTTCTA ATGATTCCGGCAGAGTCATTTGGGTGCATTTCGGGGTGAATAGTGGAGCAACCAAGTTTGCAATAGAGAATCAAGCTGTCAATGAAGCTACTTTCAGATG CCCTGATGAGATGGGATGGAAGCCACAGAAGCTACCTATTGTACCTTCAGATGGCGAAATCTCGCAAGTTCGAGAGACGGCGCTTCCTGTTAGCGAGATC ACCAAGGCGCTGGCGAACAAAGGTTACGAATTGACGGCAGAACGGGACTGA
AA sequence Show only first row Show all	>Lus10031438 pacid=23155933 polypeptide=Lus10031438 locus=Lus10031438.g ID=Lus10031438.BGIv1.0 annot-version=v1.0 MAAGSGPLLAIFLLFQLLCISLSASVQAAGEQAHCRRPPVIFNFGDSNSDTGALLAGLGFPINPPNGRAFFGGGCQSLNTTFLTPYMDSLSGSKFTNGAN FAVVGSSTLPKFVPFSLHIQLMQFLHFKSRSLQLPSLSFTPQVFQDALYSIDIGQNDIADSFSKNMTYAEVVKRIPLVLSEIHDAVKRLYEDGGGRKFWI HNTGPLGCLPQKLAMVKGDHQGFLDGAGCITSYNEAAKLFNEGLRRLCGRLRSELKGATVVYIDIYSAKYDLIANATKYGFGSSPLRACCGFRGAPYNYD IRVPCGQPGSDACREGSRSVSWDGIHYTDAANSFVASKVRLMGSEGTVPGTEISEKEAPCITVHVTGFKRFHGVSENPTEAIVGNLEEYMGKNGMPKGLV LGSCHVLETAGQGAVAPLYQTLQSAIPPNKGSSNDSGRVIWVHFGVNSGATKFAIENQAVNEATFRCPDEMGWKPQKLPIVPSDGEISQVRETALPVSEI TKALANKGYELTAERD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Lus10031438 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10011657 [exp]	1.7	0.9345
AT5G44250			Protein of unknown function DU...		Lus10021741 [exp]	3.7	0.9423
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10024386 [exp]	4.1	0.9180
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	4.6	0.9436
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10018667 [exp]	6.3	0.9280
AT2G36320			A20/AN1-like zinc finger famil...		Lus10003246 [exp]	13.0	0.9271
AT4G26060			Ribosomal protein L18ae family...		Lus10011943 [exp]	13.7	0.9269
AT1G75510			Transcription initiation facto...		Lus10010631 [exp]	14.7	0.9135
AT1G32310			unknown protein		Lus10030955 [exp]	18.2	0.9137
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10040365 [exp]	18.2	0.9188

Compare expression of checked genes

Lus10031438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.