Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26749 139 / 7e-43 C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001520 [exp] 210 / 9e-71 AT5G26749 129 / 6e-39 C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G004801 [exp] 157 / 6e-50 AT5G26749 110 / 2e-31 C2H2 and C2HC zinc fingers superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF06220 [flax] [poplar] zf-U1 U1 zinc finger CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10031439 pacid=23156015 polypeptide=Lus10031439 locus=Lus10031439.g ID=Lus10031439.BGIv1.0 annot-version=v1.0 ATGCCGTTGGGGAAATATCACTGTGATTACTGCGATAAGGAGTTCCAGGACACTCCCGTCGCTCGTAAACGCCACCTCCACAGCTCATCTCACCTCCGCG CCAAATCCCTCTGGTACAACTCCTTCCCTTCCTCCTCCTCCGCCTCCAATGCTCCGACGACGACGGTGGGACTCTGTAATCGCTTCGTCAATACAGGATT CTGCCCCTATGGAGACTCTTGCAAGTACTTGCACCTCAACAGCAACACCGCTACCTCTCAGAATTACAATTCCGCTCAAGCAGCCGGTACTCTGTCTTCC AGCTTTCAATCCGGACCGAGCTCTGTCCATGTAATGCCGAATAGCATGGGAGGGTGGTGGGGCAATCTGCCGCCGTCTCTAATGCCGCCACCTGAAGGCG GATACCGATCGGATCTTCCATATCTGGACTGGGGGTGA
AA sequence Show only first row Show all	>Lus10031439 pacid=23156015 polypeptide=Lus10031439 locus=Lus10031439.g ID=Lus10031439.BGIv1.0 annot-version=v1.0 MPLGKYHCDYCDKEFQDTPVARKRHLHSSSHLRAKSLWYNSFPSSSSASNAPTTTVGLCNRFVNTGFCPYGDSCKYLHLNSNTATSQNYNSAQAAGTLSS SFQSGPSSVHVMPNSMGGWWGNLPPSLMPPPEGGYRSDLPYLDWG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26749			C2H2 and C2HC zinc fingers sup...		Lus10031439 [exp]	0	1
AT5G04910			unknown protein		Lus10028878 [exp]	1.4	0.9296
AT1G16760			Protein kinase protein with ad...		Lus10042205 [exp]	3.3	0.8882
AT1G10800			unknown protein		Lus10037441 [exp]	5.3	0.9247
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10023226 [exp]	6.7	0.9204
AT5G67090			Subtilisin-like serine endopep...		Lus10024815 [exp]	8.7	0.9069
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042904 [exp]	26.6	0.8877
AT1G27340			Galactose oxidase/kelch repeat...		Lus10011354 [exp]	28.6	0.8840
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10009916 [exp]	32.4	0.8902
					Lus10039025 [exp]	35.8	0.8798
AT5G38710			Methylenetetrahydrofolate redu...		Lus10003051 [exp]	51.1	0.8896

Compare expression of checked genes

Lus10031439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.