Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26751 790 / 0 ATSK11 ,SK 11 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) AT3G05840 783 / 0 ATSK12 Protein kinase superfamily protein (.1.2) AT5G14640 738 / 0 ATSK13 shaggy-like kinase 13 (.1) AT4G00720 651 / 0 ASKTHETA, ATSK32 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) AT2G30980 637 / 0 ASKdZeta, ATSK23, BIL1, ATSK2-2 BIN2-LIKE 1, SHAGGY-LIKE PROTEIN KINASE 23, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 2, SHAGGY-related protein kinase dZeta (.1) AT1G06390 637 / 0 ATGSK1, GSK1, ATSK22, BIL2, ATSK2-3 BIN2-LIKE 2, SHAGGY-LIKE PROTEIN KINASE 22, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3, GSK3/SHAGGY-like protein kinase 1 (.1.2) AT1G57870 632 / 0 ATSK42 shaggy-like kinase 42 (.1.2.3) AT1G09840 630 / 0 AtHIR1, ATSK41 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) AT4G18710 628 / 0 DWF12, UCU1, BIN2, ATSK21 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) AT3G61160 590 / 0 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001519 [exp] 854 / 0 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10013088 [exp] 728 / 0 AT5G14640 741 / 0.0 shaggy-like kinase 13 (.1) Lus10022254 [exp] 725 / 0 AT5G14640 738 / 0.0 shaggy-like kinase 13 (.1) Lus10018850 [exp] 645 / 0 AT4G00720 747 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10041360 [exp] 634 / 0 AT4G00720 731 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10036568 [exp] 633 / 0 AT4G00720 733 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10029240 [exp] 624 / 0 AT4G18710 708 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Lus10007291 [exp] 623 / 0 AT4G18710 709 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Lus10025395 [exp] 619 / 0 AT4G18710 706 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G005400 [exp] 820 / 0 AT5G26751 789 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.013G004700 [exp] 807 / 0 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.014G115600 [exp] 786 / 0 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.002G190500 [exp] 780 / 0 AT5G26751 781 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.014G075100 [exp] 662 / 0 AT4G00720 778 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.002G155000 [exp] 651 / 0 AT4G00720 772 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.004G225700 [exp] 648 / 0 AT1G09840 728 / 0.0 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) Potri.003G005900 [exp] 644 / 0 AT1G09840 732 / 0.0 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) Potri.004G059000 [exp] 629 / 0 AT4G18710 728 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Potri.011G068600 [exp] 625 / 0 AT4G18710 723 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10031440 pacid=23155798 polypeptide=Lus10031440 locus=Lus10031440.g ID=Lus10031440.BGIv1.0 annot-version=v1.0 ATGGCTTCTGTGGGCATCGCGCCTACTTCTGGTATGAGGGAATCTACTTCTCATAATGCAGGTGTTGATAGATTACCTGAGGAGATGAATGACATGAAAA TTAGAGATGATAAGGAAATGGAAGCAACAGTTGTTGATGGAAATGGTACCGAAACTGGTCACATCATAGTAACAACGATTGGCGGCAGAAATGGCCAACC GAAGCAGACTATAAGCTACATGGCAGAGCGTGTTGTGGGCCATGGATCGTTTGGAGTGGTTTTCCAGGCAAAATGCTTAGAGAATGGTGAAACTGTTGCA ATAAAGAAAGTTCTTCAAGATAAGAGGTATAAGAATCGCGAGTTGCAAACCATGCGTCTGCTTGACCACCCCAATGTGGTCTCTTTAAAGCATTGCTTCT TTTCAACAACGGAGAAGGATGAACTTTACCTTAATCTGGTGCTTGAATATGTGCCTGAAACAATGCACCGTGTGATCAAACACTACAACAAGCTGACTCA GAGAATGCCGTTGATCTATGTGAAACTATATGCCTACCAGATATTCAGGGCTTTGTCATACATCCATCGTGCAATTGGAGTGTGCCACCGTGACATCAAA CCTCAAAATCTTTTGGTAAATCCACATACACATCAGGTTAAGTTATGCGATTTTGGCAGTGCTAAGGTCTTGGTGAAAGGGGAACCAAACATAGCTTATA TATGTTCGAGATATTACAGAGCTCCTGAGCTTATATTTGGAGCCACTGAGTACACAACAGCTATTGATATTTGGTCTGCAGGCTGCGTTATTGCTGAGCT GCTACTTGGACAGCCTCTATTCCCTGGTGAAAGTGGAGTTGACCAGCTTGTGGAGATCATCAAGGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGT ATGAACCCAAATTATACAGAGTACAAATTCCCTCAGATCAAGGCTCACCCATGGCACAAGGTATTCCACAAGCGCATGCCCCCAGAAGCAGTCGATTTGG TCTCGAGACTTCTCCAATACTCTCCCAACTTACGATGCACAGCTCTGGATGCTATGACACACCCTTTCTTCGACGAGCTACGCGACCCGAACACACGTTT GCCCAACGGACGTTTCCTCCCACCGCTATTTAACTTTAAAACTCACGAAATGAAGGGGGTGCCGATGGAGACATTAGTTAAGTTGATACCAGAGCATGCG AGGAAGCAGTGTCCGTTTGTCGGGCTATGA
AA sequence Show only first row Show all	>Lus10031440 pacid=23155798 polypeptide=Lus10031440 locus=Lus10031440.g ID=Lus10031440.BGIv1.0 annot-version=v1.0 MASVGIAPTSGMRESTSHNAGVDRLPEEMNDMKIRDDKEMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLENGETVA IKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETMHRVIKHYNKLTQRMPLIYVKLYAYQIFRALSYIHRAIGVCHRDIK PQNLLVNPHTHQVKLCDFGSAKVLVKGEPNIAYICSRYYRAPELIFGATEYTTAIDIWSAGCVIAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKC MNPNYTEYKFPQIKAHPWHKVFHKRMPPEAVDLVSRLLQYSPNLRCTALDAMTHPFFDELRDPNTRLPNGRFLPPLFNFKTHEMKGVPMETLVKLIPEHA RKQCPFVGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10031440 [exp]	0	1
AT4G31170			Protein kinase superfamily pro...		Lus10020374 [exp]	4.5	0.8961
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10038981 [exp]	5.3	0.8882
AT4G29960			unknown protein		Lus10001629 [exp]	5.5	0.9007
AT4G27880			Protein with RING/U-box and TR...		Lus10018110 [exp]	6.5	0.9012
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Lus10035728 [exp]	7.1	0.8725
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10038827 [exp]	7.4	0.9146
AT1G25400			unknown protein		Lus10034335 [exp]	8.8	0.8454
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014942 [exp]	9.0	0.8768
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10024386 [exp]	9.5	0.8887
AT2G19760		PRF1, PFN1	profilin 1 (.1)		Lus10011138 [exp]	9.9	0.8617

Compare expression of checked genes

Lus10031440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.