Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24490 644 / 0 ATRGTA1 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) AT5G41820 523 / 1e-177 ATRGTA2 RAB geranylgeranyl transferase alpha subunit 2 (.1) AT3G59380 76 / 2e-14 FTA, PLP, ATFTA, PFT/PGGT-IALPHA PLURIPETALA, farnesyltransferase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001518 [exp] 1149 / 0 AT4G24490 630 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10022404 [exp] 1146 / 0 AT4G24490 656 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10015954 [exp] 85 / 2e-17 AT3G59380 414 / 1e-145 PLURIPETALA, farnesyltransferase A (.1) Lus10000763 [exp] 85 / 2e-17 AT3G59380 421 / 1e-147 PLURIPETALA, farnesyltransferase A (.1) Lus10042569 [exp] 46 / 7e-05 AT1G10095 387 / 2e-132 Protein prenylyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G225100 [exp] 871 / 0 AT4G24490 659 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Potri.007G127500 [exp] 89 / 6e-19 AT3G59380 433 / 2e-153 PLURIPETALA, farnesyltransferase A (.1) Potri.013G047100 [exp] 54 / 2e-07 AT1G10095 430 / 4e-149 Protein prenylyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01239 [flax] [poplar] PPTA Protein prenyltransferase alpha subunit repeat
Representative CDS sequence Show only first row Show all	>Lus10031441 pacid=23155966 polypeptide=Lus10031441 locus=Lus10031441.g ID=Lus10031441.BGIv1.0 annot-version=v1.0 ATGCACGGCCGCCCTCGTAATCCCTCGAAGCCCGTCGATGAAGCTGGATTACTTGCCAAGGCCAGCAAGCTCCGCGCCCTCCAATCGGATTTCATTTCCA ATCACCAGAACAAAATTTACACCAAAGAAGCTGTAGAGCTGAGCGCCAAACTTCTCGAGATCAATCCCGAGCTGTACACTGCTTGGAACTACAGGAAGCT TGCTGTTCACCACAATCTAGCTCTAGCTCACTCTGAATCCAATCCCGACTCGGTTGACTCCATTCTCGATGCTGAACTTAAAGTGGTGGAGAATGCGTTG AAGCAGAATTATAAATCGTATGGAGCTTGGCACCATAGGAAATGGGTGCTGTCCAAAGGGCATTCTTCTGTTGATAAGGAGCTGGAGCTTCTGGACAAAT TCCAATCTAAGGATGCGCGCAATTTTCATGCCTGGAACTACCGCAGATTTGTGGCAGCATTGATGAAACGTTCAGACGAGGATGAAGTAGAGCACACTCA GAATCTGATTGAGAAAAATCTCAGCAACTATTCTGCCTGGCATAATCGCAGTGTACTTCTGTCAAACTTGATGAACAAGAAAGCTGAAGGCTTTACCAAT AGAGAAGAGGTTCTAACCAGGGAGTATGAATTGGTGCGTGAAGCTCTTTTTACTGACGAAGATGATCAAAGTGGATGGTTCTATCATCTTTGGCTTCTTG ATCAAACTGTCAGATCTGAGTATCCCCTGCTTGTTTCTTCATGGCCTGTTCATGGTTCTGATATTACTTTGCCAGCAGCTGATCGCCTCAGTGGTTGTGC TTCTCCAGTGAATCAGTCCAGTTTCAAAAATTCGAAGAAATTTCCACTTATTCTTTACTTCAACCAGTCTGTTGAGGGTATAAACTCATCTACTGTAAGC GTCTCAACTGAGTTTACCTCAACTACTGATCTTATTTGGAAGCCGTTTCCTGTAATTGACTCTCATAGTGCAAAAGTCTGGGCTACGCATTTAGATGTAC CTGGTGGGGCTCCCGACTCTTCTGGAACTTATCAGGTAGAGGTGAAGGTTGGACACTTGCCAGGAATTGTTTCTTCTATCGGTGTACAGTACCGTTATCC TTCTCAGATTTCGTTTCAACTGCATGTGCAAAATGCCAAACTTGAATCTGGAGAAGGCTTAAGTTCCGGGAGAATGCAGTGGAAAGATGATTGTTTCTCT CTTTATGAATCTGGTTCTGCTACACCCGGTCTGGTTGACCTACTTGATAACCTAAGAATCAAGAATGGACCAGAGCTAACAGCTTCACCATGGCAAGAAA GAATCTTAGATGAAGAGACTAGCATCTTCCGTGAATTATTGGACTGTAAAATTGGGAAGCTGACTGTGGCTAGACTGTTGACTGCTTACGATTTATTGAG ACCTTTCGATAAACCAGTCCATTCAAAGGAAGTTCTGGAGCTATACAGTGAGCTAATGAAGTTGGACCCTCCTCATCGCCAATATTACAAAGATAACCAC AGTTTGGTTCTCTTGCAACAGGTGACTTCTAGTAGGGAGTCTTTGCTGAGTCATTGTTACAACTATTGTGACTCTACTTCGTCGAACAATGGCGGTCCAT TGTGTTTGCGACTCAACAAGCTAGCAATTTCACAGCTGGGATCATTCGAAAAGTTACTATGGGTTCAAGTGCTAGACCTCAGCAACAATGAACTTCAGTC AATTAAAGGAATGGAGGCAATGCAGCTCCTCTCACACCTGTGTTTGAGCAACAACAAGCTGAAAAATTTCAGTGCTTTGGAGCCTCTAAGGCATTTGACG TCGTTGAAAGTACTGGACGTTTCGAATAACGAGATAGGTGCGCATTCCATCGACACGACCCGATATCAGTGTCGTTCGCCGTTATCGCATTGGGTTGATG GAAGTGATGGGGATAGCAATGATGTGGGTTGGAGGAGGGACTATTGGGAAGCCTATTTCATCTTGAAAGACATGGAGTTGACTCAAATGGATGTTGCAGG GAATGCAATTGCTAGTGAGAGTTTCACCTTGTTTCTGGAGAAGGTGCTGCCTACGCTGAAGTGGCTGGATGGTGTACACGTAAAATGA
AA sequence Show only first row Show all	>Lus10031441 pacid=23155966 polypeptide=Lus10031441 locus=Lus10031441.g ID=Lus10031441.BGIv1.0 annot-version=v1.0 MHGRPRNPSKPVDEAGLLAKASKLRALQSDFISNHQNKIYTKEAVELSAKLLEINPELYTAWNYRKLAVHHNLALAHSESNPDSVDSILDAELKVVENAL KQNYKSYGAWHHRKWVLSKGHSSVDKELELLDKFQSKDARNFHAWNYRRFVAALMKRSDEDEVEHTQNLIEKNLSNYSAWHNRSVLLSNLMNKKAEGFTN REEVLTREYELVREALFTDEDDQSGWFYHLWLLDQTVRSEYPLLVSSWPVHGSDITLPAADRLSGCASPVNQSSFKNSKKFPLILYFNQSVEGINSSTVS VSTEFTSTTDLIWKPFPVIDSHSAKVWATHLDVPGGAPDSSGTYQVEVKVGHLPGIVSSIGVQYRYPSQISFQLHVQNAKLESGEGLSSGRMQWKDDCFS LYESGSATPGLVDLLDNLRIKNGPELTASPWQERILDEETSIFRELLDCKIGKLTVARLLTAYDLLRPFDKPVHSKEVLELYSELMKLDPPHRQYYKDNH SLVLLQQVTSSRESLLSHCYNYCDSTSSNNGGPLCLRLNKLAISQLGSFEKLLWVQVLDLSNNELQSIKGMEAMQLLSHLCLSNNKLKNFSALEPLRHLT SLKVLDVSNNEIGAHSIDTTRYQCRSPLSHWVDGSDGDSNDVGWRRDYWEAYFILKDMELTQMDVAGNAIASESFTLFLEKVLPTLKWLDGVHVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Lus10031441 [exp]	0	1
AT2G35920			RNA helicase family protein (....		Lus10009022 [exp]	3.7	0.9055
AT5G11560			catalytics (.1)		Lus10022143 [exp]	6.7	0.9119
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10008428 [exp]	10.2	0.9015
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10043451 [exp]	13.0	0.9048
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023426 [exp]	16.0	0.8999
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022482 [exp]	24.0	0.8990
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043477 [exp]	27.4	0.8904
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10033436 [exp]	31.7	0.8841
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10030088 [exp]	32.1	0.8870
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10026424 [exp]	32.2	0.8770

Compare expression of checked genes

Lus10031441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.