Plant FIBer expression Database

Lus10031442 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09450 551 / 0 AtHaspin Haspin-related gene, Protein kinase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001517
[exp]
1023 / 0 AT1G09450 607 / 0.0 Haspin-related gene, Protein kinase superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G003400
[exp]
636 / 0 AT1G09450 610 / 0.0 Haspin-related gene, Protein kinase superfamily protein (.1)
Potri.013G003600
[exp]
481 / 3e-164 AT1G09450 462 / 6e-158 Haspin-related gene, Protein kinase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF12330 Haspin_kinase Haspin like kinase domain
Representative CDS sequence
>Lus10031442 pacid=23155987 polypeptide=Lus10031442 locus=Lus10031442.g ID=Lus10031442.BGIv1.0 annot-version=v1.0
ATGACAGCGCGCGCTTTCAACTCACTTTCCTCCCCTCTCCAGAATTCAAAAAACCAGTCTCACCTCGAGAACCGGATTCTGCAAACAATGAGTAGCCGTG
GCGATCGAGATTTGTGGTCGGAGTTAATGGCCGAAGAGGAATGCGGAGGAGGAGATCGTCATCGTCTAAAGCAGCAGCATCAGCCGGAGCAAGCCATTTA
CCGACGCAGATGCCCCGCGGCTCAACCCCAATCTCACCTGGAACCTCTTGCTCCACTGAATCAGTCTCACTTGAACAATCTGAATCGTCCGAGTTTGGTT
CCTCCTCCTGTCAAGCGACTTAGCTGGAATCGTTCTCTGTCCACCAGAGGGAGGGTTAGCATAGCTGTCGTAGCTTCTGTCGACGATGGCCCTCAAAAGA
AGAATAAGCCGAAGCTGCCCAGGGGAAATGGAAAGGCGAAGGGAAAGGAAAAACCATCTGTTCATAAGCCTCCTCAAAACTTTGAGAAGGAGCGGGAATA
CTTTAAGGAAGTTGATGATTTTGAATTGCTGGAGGAGAGCCCTTCTCCCAAGCATCCTTCCACCTGGGTCGCATCCAATCCAACTGATGCTGCACTCGTC
CAGCCTCTCCATTCCAGATTACCCAATTGGTTAATCTCGCACAATTTCAGCTCCAGTTCTGATCTTTCCTCCACATTGTCTAAGATATTAGTTACTCCAG
ACATGCCTTCGCAACCTATCGACACGGATGGTTTTGGCAACTTCGATTTGAAGACCCCAGAAAAGGATTCCTTTAAACCTCATTCCAATATGCATTCCAC
CGTAGCAAGAATCCATTCGTACCTGCCACACAAAGCTGTTAATCGAATAGAGAATGGTAGGTTCTCTGGAGAGGGTGTGCCTGGTGTTGAATTTGAAGAC
ATCGATGCTGCTGTTAGGAAGTTGTCTTTGGCATCGACATCTTCTTCATTGGATCTTGACTTTGTGGATCCTTTTGCGGCTCTATTAGCTTACTGCGGTC
AATCATCCCCGTTAACACTGTTGGATGTGTTCTCAAAATACTGTCACCCGGATGATATAGTGAAAGTGGGTGAAGGTACTTATGGTGAAGCCTTTAAAGT
AGGCAATACTGTGTGTAAATTAGTACCGATCGATGGCGACTTGCGAGTAAATGGAGAAGTGCAAAAGAGATCAGAAGAACTCCTTGAAGAGGTCATTCTT
TCCAAGACTCTTAATGGACTGAGAAGCGGTGCTTCGGTACAAAATGCATGCACAACATTCATTGAGACTCTGGAGTTAAAGGTGTGCCAAGGTCCTTACG
ATCCTGCATTAATTAAGGCATGGGAAGAATGGGATGAACAGAACAATTCCGAAAATGATCACCCTAGGAGTTTCCCGGAGAAACAGCGGTATGTTGTATT
CATATTGCAACATGGTGGCAAAGACCTTGAAAGCTTTGTGCTTTTGAACTTTGATGAAGCGCGGAGCTTATTGGTCCAGATAGCGTCCGCATTTGCAGTC
GCAGAAGCAGCATATGAATTCGAACATCGCGATCTTCACTGGGGAAACATTCTTTTAAGCCGAAATGAATCTGCCAAACTCCAGTTTACCCTCGAAGGAA
AGAAAAGGGTTCTCAAAACATTTGGCCTGTCAGTGTCAGTAATCGATTTCACCCTGTCCCGAATTAGTACCGGTCAGGATATACTGTTCTTCGATATGTC
ATCTGATCCTGACTTGTTCAAGGGTCCAAAGGGGGATAGACAGGCAGAAACATATAGAAAGATGAAGGAGGTTACAAAAGACTCCTGGGAAGGAAGCCAT
CCAAGGACAAACGTCTTATGGCTGCTTTACTTGGTCGACATCTTGCTCTTGAAGAAATCCTTTGAACGTTCATCTAAACACGAAAGAGAGATGCGTTCAC
TGAAGAAGAGGCTGGACCAGTACAAGTCAGCCAAAGAAGCGATTTCTGATCCTTTCTTTACCGACTTGATGGAGGAGGTTAGTTAA
AA sequence
>Lus10031442 pacid=23155987 polypeptide=Lus10031442 locus=Lus10031442.g ID=Lus10031442.BGIv1.0 annot-version=v1.0
MTARAFNSLSSPLQNSKNQSHLENRILQTMSSRGDRDLWSELMAEEECGGGDRHRLKQQHQPEQAIYRRRCPAAQPQSHLEPLAPLNQSHLNNLNRPSLV
PPPVKRLSWNRSLSTRGRVSIAVVASVDDGPQKKNKPKLPRGNGKAKGKEKPSVHKPPQNFEKEREYFKEVDDFELLEESPSPKHPSTWVASNPTDAALV
QPLHSRLPNWLISHNFSSSSDLSSTLSKILVTPDMPSQPIDTDGFGNFDLKTPEKDSFKPHSNMHSTVARIHSYLPHKAVNRIENGRFSGEGVPGVEFED
IDAAVRKLSLASTSSSLDLDFVDPFAALLAYCGQSSPLTLLDVFSKYCHPDDIVKVGEGTYGEAFKVGNTVCKLVPIDGDLRVNGEVQKRSEELLEEVIL
SKTLNGLRSGASVQNACTTFIETLELKVCQGPYDPALIKAWEEWDEQNNSENDHPRSFPEKQRYVVFILQHGGKDLESFVLLNFDEARSLLVQIASAFAV
AEAAYEFEHRDLHWGNILLSRNESAKLQFTLEGKKRVLKTFGLSVSVIDFTLSRISTGQDILFFDMSSDPDLFKGPKGDRQAETYRKMKEVTKDSWEGSH
PRTNVLWLLYLVDILLLKKSFERSSKHEREMRSLKKRLDQYKSAKEAISDPFFTDLMEEVS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G09450 AtHaspin Haspin-related gene, Protein ... Lus10031442
[exp]
0 1
AT2G31190 WXR1, RUS2 weak auxin response1, ROOT UV-... Lus10033888
[exp]
2.0 0.6361
AT2G20990 SYT1, NTMC2TYPE... SYNAPTOTAGMIN 1, ARABIDOPSIS T... Lus10019782
[exp]
3.7 0.6615
AT1G46912 F-box associated ubiquitinatio... Lus10003349
[exp]
5.3 0.6619
AT5G03280 CKR1, PIR2, ORE... ORESARA 3, ORESARA 2, ENHANCED... Lus10026517
[exp]
5.5 0.6127
AT4G02280 ATSUS3, SUS3 sucrose synthase 3 (.1) Lus10008204
[exp]
9.3 0.6491
AT2G03150 EMB1579 embryo defective 1579, ATP/GTP... Lus10026618
[exp]
41.1 0.5465
AT4G05200 CRK25 cysteine-rich RLK (RECEPTOR-li... Lus10031582
[exp]
116.0 0.5063

Lus10031442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.