Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30933 120 / 2e-32 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT1G29380 115 / 8e-29 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G09460 112 / 1e-27 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G55180 101 / 4e-23 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 97 / 2e-21 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 96 / 3e-21 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 96 / 4e-21 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G05430 86 / 5e-20 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G67460 87 / 2e-18 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 86 / 8e-18 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001516 [exp] 252 / 1e-79 AT2G30933 143 / 3e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10007342 [exp] 120 / 5e-31 AT2G30933 167 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10020765 [exp] 118 / 2e-30 AT2G30933 169 / 4e-52 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10004546 [exp] 110 / 3e-27 AT1G29380 175 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10004600 [exp] 110 / 6e-27 AT1G29380 168 / 7e-50 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10015259 [exp] 108 / 6e-27 AT1G29380 143 / 4e-41 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10025379 [exp] 100 / 5e-24 AT1G29380 140 / 1e-39 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10015151 [exp] 102 / 2e-23 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040600 [exp] 100 / 1e-22 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G003500 [exp] 139 / 1e-35 AT2G30933 142 / 1e-38 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.013G003500 [exp] 138 / 1e-35 AT1G09460 144 / 3e-38 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.002G059600 [exp] 117 / 4e-30 AT2G30933 164 / 5e-50 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.001G353400 [exp] 111 / 1e-27 AT1G29380 144 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.005G202400 [exp] 109 / 4e-27 AT2G30933 140 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.011G078500 [exp] 107 / 3e-26 AT1G29380 154 / 1e-44 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G094400 [exp] 104 / 4e-24 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.007G111000 [exp] 96 / 3e-23 AT4G05430 148 / 5e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G007800 [exp] 93 / 4e-22 AT4G05430 160 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G012000 [exp] 93 / 5e-22 AT4G05430 155 / 3e-49 Carbohydrate-binding X8 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10031443 pacid=23155817 polypeptide=Lus10031443 locus=Lus10031443.g ID=Lus10031443.BGIv1.0 annot-version=v1.0 ATGGTGGTCTCCTCTCAGCTCCTTCTTCTCTTCCTCCTCTGCTCCTCTCTCCTTACTCTGCCTGCTGCCGGAACAGGAACTCTAGTGGGTTTGTTCTACA ATGGCGGAGAGAATGCTGCGACTTCTTCAAGGATCTTGTCTTTCCTTCCTTCCTCTCAGATTCAAGGTCCCAGGTCTACAAGCTGGGAGTTTCATCAACT GTTTCCTTCTTCTAGGAGGGAGCTAAGTTCGAAGGTGGAAGCTTTTGTTAACAAAGATGGAGTTACAATCCCTACCACTACCCCTACAATCATTACTGTC CCTGCAACTATCCCTACTCCCACTACAGCCACCAATAATCCTCCTGTAACTCCTCTCCCTCTTCCCACCACCATTCCTCCCACAAACCCTGCCGCCACAA CTCCACCAGTTACCATTCCTGGCGGTGTTAGCCAGCAACCAGTTACCAATCCAGCCACCACTTACCCTGTCCCTTCAACTGGTACGGTACCAAACCCTGC AGGTACTGTACCACCACCTGCTGGTACTGTACCAAACCCAGTGGTTGCTCCACCTGCTGTCACAAACCCTGTTGTTGCTCCTCCTGCAGTGACAAACCCT CCTGCTGGAACGACCAATGCTCCAGGAGTTTCGTGGCAGAGCTGGTGTGTGGCGAAAGGGGGTGTGTCAGCGGCTTCATTGCAGGCGGCACTGGATTATG CATGTGGAACTGGAGGTGTGGATTGTTCACAAATCCAGCAAGGTGCTGCTTGTTACAACCCCAACACTCTTCAGAACCATGCTTCTTTTGCTTTTAATAA CTACTATCAGAAGAATCCTGTGGCTACCAGCTGTGATTTCGGTGGGACTGCTGTTGTCGTCAGTAATAATCCAAGTTCTGGAACATGCACGTATCCTTCA TCCTCGTCATCTTCATCATCATCTTCATCGACTTCATCTCCCCCCACGACGACAGCAACCTCTCCATTGACGCCAACATCTCCCACACCGTCGACATCAA CTACCAATCCCGTCACCACTAACCCTACTACGATTTCATCTCCCTCCGGAAATGGAACATCAGGCACCAGTGTTACTCCTCCATCAGTGTTGAACTCAAG CAGCAGCAGCCCTACTGCTGGCACTGCCAACGTGTTCGGTTTCGACAATCCTCCAGGAGTCACCACCGAAGGTCCAATGGCTTCCGACTCAGCTGCTTTG CGACCGTTGATCCGATGTGTGGTTCTTGCCGTGTGCTTCATAGCCGGAGCAGTCGTTTTTTACGTGTAG
AA sequence Show only first row Show all	>Lus10031443 pacid=23155817 polypeptide=Lus10031443 locus=Lus10031443.g ID=Lus10031443.BGIv1.0 annot-version=v1.0 MVVSSQLLLLFLLCSSLLTLPAAGTGTLVGLFYNGGENAATSSRILSFLPSSQIQGPRSTSWEFHQLFPSSRRELSSKVEAFVNKDGVTIPTTTPTIITV PATIPTPTTATNNPPVTPLPLPTTIPPTNPAATTPPVTIPGGVSQQPVTNPATTYPVPSTGTVPNPAGTVPPPAGTVPNPVVAPPAVTNPVVAPPAVTNP PAGTTNAPGVSWQSWCVAKGGVSAASLQAALDYACGTGGVDCSQIQQGAACYNPNTLQNHASFAFNNYYQKNPVATSCDFGGTAVVVSNNPSSGTCTYPS SSSSSSSSSSTSSPPTTTATSPLTPTSPTPSTSTTNPVTTNPTTISSPSGNGTSGTSVTPPSVLNSSSSSPTAGTANVFGFDNPPGVTTEGPMASDSAAL RPLIRCVVLAVCFIAGAVVFYV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30933			Carbohydrate-binding X8 domain...		Lus10031443 [exp]	0	1
AT4G39100		SHL1	short life, PHD finger family ...		Lus10017482 [exp]	1.4	0.8134
AT3G22440			FRIGIDA-like protein (.1)		Lus10010560 [exp]	10.3	0.7986
AT1G49230			RING/U-box superfamily protein...		Lus10006787 [exp]	11.5	0.7831
AT3G52490			Double Clp-N motif-containing ...		Lus10008970 [exp]	15.5	0.7985
AT5G62350			Plant invertase/pectin methyle...		Lus10038914 [exp]	16.1	0.7676
					Lus10038438 [exp]	17.0	0.6998
AT5G57480			P-loop containing nucleoside t...		Lus10025479 [exp]	17.3	0.7710
AT2G23950			Leucine-rich repeat protein ki...		Lus10019963 [exp]	17.4	0.7910
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10028301 [exp]	17.9	0.7861
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10036132 [exp]	19.6	0.7736

Compare expression of checked genes

Lus10031443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.