Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26770 383 / 2e-133 unknown protein AT1G09470 318 / 1e-107 unknown protein AT3G05830 315 / 3e-106 unknown protein AT1G09483 99 / 2e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001515 [exp] 600 / 0 AT5G26770 410 / 8e-144 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G003600 [exp] 454 / 4e-161 AT5G26770 375 / 5e-130 unknown protein Potri.013G003400 [exp] 444 / 5e-157 AT5G26770 374 / 1e-129 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031444 pacid=23155899 polypeptide=Lus10031444 locus=Lus10031444.g ID=Lus10031444.BGIv1.0 annot-version=v1.0 ATGTCAGTTCAGGGAAGAAGATCTTCATGTACCATCTCAGTTTCTACTGATGGAGAGATTGATCCACTGTTGAAAGATTTGAATGAGAAGAAGCAACTCT TTAGGCGCAACGTTGTCTCTTTAGCTGCTGAGCTGAAGGATGTCAGGAGTCGCCTCTCATCTCAAGAACAGTCATTTGCTAAAGAATCCTTCAACCGACA GGAAGCAGAAAACAAAGCGAAGGGCATGGAAGAGCAGATTAGTAGACTGCACCATACTTTGGAAGAGAGGAATTCTCAGCTTCATGCGTCTACTTCTACT GTCGAGCAGTACCTGAAGGATTTGGACAGTCTAAGATCGGAACTTGCTGCCACTCAAGCAACCGCAGATGCAAGTGCAACAGCGGCACAGTCCACACAGC TACAATGCTTGGCATTATTGAAGGAGCTAGATTCGAAGAACACTTCGGTAAAAGAGAACGAGGACCGCGTAACTAGGCTAGGAAAGCAGTTGGATAGCTT GCGCAAGGATCTTCAAGAAAGGGAGGACTCTCAGAAGCAACTTAAAGATGAAGTCTTGAGAATTGAGCACGACATTATGCAAGCGATCGCCTCTGCTGGG GAGAGCAAAGACTGCGAGCTGAGGAAGATTCTGGATGAGGTGTCCCCTAAGAATTTTGAAAAAATCAATAAGCTTTTGATTGGTAAGGACGAAGAGATAG TGAAGTTGAGAGATGAAATCAGGATTATGTCTGCTGACTGGAAGGTTAAGACCAATGATTTGGAGTCTCAGCTAGAGAAACAGAGGCGAGCTGATCAAGA ACTGAGAAAGAGAGTTTTAAAGTTAGAATTCTGTCTTCAGGAAGCTCGTTCTCAGACAAGAAAGCTCGTCAGGATGGGGGAACGAAGAGACAGAGCTATT AAAGAACTCCAGAACCAATTAGCAGTGAAGCAGACACTCGGAGAAGGAAATAGCAACGAAAAGCAGAACTTCTGGGAAACATCTAGCTTCAAGATTGTAG CTTCCATGTCCATGTTAGTACTGGTGATGTTCTCGAAGCGATGA
AA sequence Show only first row Show all	>Lus10031444 pacid=23155899 polypeptide=Lus10031444 locus=Lus10031444.g ID=Lus10031444.BGIv1.0 annot-version=v1.0 MSVQGRRSSCTISVSTDGEIDPLLKDLNEKKQLFRRNVVSLAAELKDVRSRLSSQEQSFAKESFNRQEAENKAKGMEEQISRLHHTLEERNSQLHASTST VEQYLKDLDSLRSELAATQATADASATAAQSTQLQCLALLKELDSKNTSVKENEDRVTRLGKQLDSLRKDLQEREDSQKQLKDEVLRIEHDIMQAIASAG ESKDCELRKILDEVSPKNFEKINKLLIGKDEEIVKLRDEIRIMSADWKVKTNDLESQLEKQRRADQELRKRVLKLEFCLQEARSQTRKLVRMGERRDRAI KELQNQLAVKQTLGEGNSNEKQNFWETSSFKIVASMSMLVLVMFSKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26770			unknown protein		Lus10031444 [exp]	0	1
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023908 [exp]	1.0	0.9229
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10028430 [exp]	2.0	0.8622
AT1G09010			glycoside hydrolase family 2 p...		Lus10000159 [exp]	3.0	0.8566
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10026315 [exp]	4.0	0.8528
AT5G19950			Domain of unknown function (DU...		Lus10000162 [exp]	6.0	0.8288
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	7.9	0.8496
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003074 [exp]	8.5	0.8485
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10028961 [exp]	9.2	0.7868
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10014324 [exp]	9.5	0.8507
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10013684 [exp]	14.4	0.8309

Compare expression of checked genes

Lus10031444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.