Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26600 589 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT3G62130 536 / 0 LCD L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G08490 52 / 4e-07 ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS chloroplastic NIFS-like cysteine desulfurase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001514 [exp] 801 / 0 AT5G26600 588 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10009974 [exp] 546 / 0 AT3G62130 658 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10038033 [exp] 545 / 0 AT3G62130 657 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10031670 [exp] 54 / 1e-07 AT1G08490 691 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1) Lus10039480 [exp] 47 / 3e-05 AT3G06950 411 / 6e-144 Pseudouridine synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G002400 [exp] 610 / 0 AT5G26600 647 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.005G003000 [exp] 606 / 0 AT5G26600 650 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.002G187200 [exp] 546 / 0 AT3G62130 685 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G112700 [exp] 543 / 0 AT3G62130 682 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.009G066000 [exp] 58 / 8e-09 AT1G08490 683 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00266 [flax] [poplar] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Lus10031445 pacid=23155955 polypeptide=Lus10031445 locus=Lus10031445.g ID=Lus10031445.BGIv1.0 annot-version=v1.0 ATGAACGGCGGCGACGCCACCTCGGAATTCTCCCACCACGACCCATCCGTGGCGCGAATCAACAACGGCAGCTTCGGGTGCTGTCCACGCTCCGTCACCG CCGCGCAGCAAGACTGGCAAGGTCAGTTCCTCCGCCAACCCGACCACTTCTTCCTCAACCTCCTCCAGCCAGCCATCGCCCGCTCACGCACCCTCGTCGC GTCCTTAGTCAACGCGCGCCACGTGGACGAGATCTCCTTAGTGGACAACGCCACCACCGCCGCCGCCATCTTCCTCCAGCACTGCTCCTGGTCGTTCGCC GAGGGGAGATTCTCCCCCGGGGACGCCGCCGTGATGCTTCACCACGCCTACGGCGCGGTGAAGAAGTCGGTAGAGGCGTACATCACCAGAGCCGGCGGCC ACGTCATCGAGGTCGACTTACCTTTCCCTGTCCGATCCGAGGAGGAGATCGTCGACAATTTCCGGAAAGCGCTGGCGAAGGGGAAGGCGGAAGGGAGGAG AATTAGGGTGGCAGTGATCGATCACGTGACGTCGATGCCGACGGTGGTGATCCCGGTGAAGGATCTGGTCAAGATCTGCAGAGAGGAGGGCGTTGAACAA GTGTTCGTGGACGCTGCTCACGGAATTGGATGCGTTGATGTGGATATGCAGGAGATTGGAGCTGATTTCTACACCAGTAATCTGCATAAGTGGTTCTTCT GCCCTCCTTCTGTAGCTTTCCTCTACTGCAGGAAGGAATTCGATAATCATCATCATCATCCGCAACTGCATCATCCGGTGGTGTCTCACGAGTATGGCAA TGGATTGCCGGTGGAGAGCGGCTGGATAGGGACGAGGGATTACAGCGCGCAGCTGGTGGTGCCGCGAGCGATGGAGTTCGTCAACAGCTATCCAGGAGGG ATGGAAGCGATCAAGGAGAAGAACCATACAGCCGTCGTCGAAATGGGCAAAATGCTGGCGGAAGCTTGGGGGACACACTTGGGTTGCCCTCCGCATATGT GTTCGAGTATGGTGATGGTTGGATTGCCGGCATTGTTAGGAGTTCGAAGCGACTCCGATGCGCTGAAGCTCAGAGTTCATCTCAGGGATTGCTTCAGAGT GGAAGTCCCGATATACTTCAACAAGCAGCAGCGGTCTGATGAGAAGGACGATGGAGTTGCTGTGATTATAACTGGTTACGTTAGGATTTCTCATCAGCTG TACAATAAGACTGAAGACTATCACAGGCTTAGAGATGCTGTGAACCAATTGGTTAGAGATGAGTTCACCTGTGCTTCCCTGCCCGATTCGAAATGA
AA sequence Show only first row Show all	>Lus10031445 pacid=23155955 polypeptide=Lus10031445 locus=Lus10031445.g ID=Lus10031445.BGIv1.0 annot-version=v1.0 MNGGDATSEFSHHDPSVARINNGSFGCCPRSVTAAQQDWQGQFLRQPDHFFLNLLQPAIARSRTLVASLVNARHVDEISLVDNATTAAAIFLQHCSWSFA EGRFSPGDAAVMLHHAYGAVKKSVEAYITRAGGHVIEVDLPFPVRSEEEIVDNFRKALAKGKAEGRRIRVAVIDHVTSMPTVVIPVKDLVKICREEGVEQ VFVDAAHGIGCVDVDMQEIGADFYTSNLHKWFFCPPSVAFLYCRKEFDNHHHHPQLHHPVVSHEYGNGLPVESGWIGTRDYSAQLVVPRAMEFVNSYPGG MEAIKEKNHTAVVEMGKMLAEAWGTHLGCPPHMCSSMVMVGLPALLGVRSDSDALKLRVHLRDCFRVEVPIYFNKQQRSDEKDDGVAVIITGYVRISHQL YNKTEDYHRLRDAVNQLVRDEFTCASLPDSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10031445 [exp]	0	1
AT2G22120			RING/FYVE/PHD zinc finger supe...		Lus10019687 [exp]	1.0	0.8915
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10027883 [exp]	2.0	0.8821
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	3.9	0.8720
AT1G03140			splicing factor Prp18 family p...		Lus10042599 [exp]	4.9	0.8657
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	7.3	0.8474
AT1G63850			BTB/POZ domain-containing prot...		Lus10023573 [exp]	7.7	0.7990
AT1G03350			BSD domain-containing protein ...		Lus10012761 [exp]	8.7	0.8572
AT1G65320			Cystathionine beta-synthase (C...		Lus10037535 [exp]	8.9	0.8455
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10018455 [exp]	8.9	0.7916
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	9.5	0.8471

Compare expression of checked genes

Lus10031445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.