Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26610 301 / 3e-102 D111/G-patch domain-containing protein (.1.2.3) AT2G42330 59 / 1e-09 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1.2) AT3G52350 56 / 3e-09 D111/G-patch domain-containing protein (.1) AT1G17070 55 / 4e-08 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) AT5G08535 49 / 3e-07 D111/G-patch domain-containing protein (.1.2) AT3G54230 50 / 1e-06 SUA suppressor of abi3-5 (.1.2) AT3G52120 49 / 2e-06 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) AT3G57910 47 / 6e-06 D111/G-patch domain-containing protein (.1) AT1G30480 42 / 0.0003 DRT111 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) AT4G34140 42 / 0.0003 D111/G-patch domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001513 [exp] 411 / 7e-146 AT5G26610 356 / 6e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10010955 [exp] 57 / 1e-08 AT3G54230 943 / 0.0 suppressor of abi3-5 (.1.2) Lus10031369 [exp] 56 / 2e-08 AT3G54230 812 / 0.0 suppressor of abi3-5 (.1.2) Lus10002252 [exp] 54 / 7e-08 AT1G17070 622 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10000930 [exp] 54 / 9e-08 AT1G17070 895 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10037485 [exp] 52 / 3e-07 AT3G52120 457 / 3e-158 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Lus10015703 [exp] 50 / 1e-06 AT3G52120 477 / 2e-166 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Lus10021033 [exp] 49 / 2e-06 AT3G57910 269 / 4e-90 D111/G-patch domain-containing protein (.1) Lus10023819 [exp] 48 / 4e-06 AT3G57910 273 / 1e-91 D111/G-patch domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G002100 [exp] 353 / 1e-122 AT5G26610 289 / 1e-97 D111/G-patch domain-containing protein (.1.2.3) Potri.005G002700 [exp] 348 / 7e-121 AT5G26610 294 / 1e-99 D111/G-patch domain-containing protein (.1.2.3) Potri.008G003100 [exp] 54 / 7e-09 AT5G08535 107 / 5e-31 D111/G-patch domain-containing protein (.1.2) Potri.004G081800 [exp] 56 / 1e-08 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2) Potri.013G076000 [exp] 56 / 2e-08 AT1G17070 853 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Potri.019G043200 [exp] 55 / 3e-08 AT1G17070 794 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Potri.001G269900 [exp] 52 / 2e-07 AT3G52120 500 / 3e-176 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Potri.016G048600 [exp] 51 / 2e-07 AT3G57910 215 / 1e-69 D111/G-patch domain-containing protein (.1) Potri.009G064600 [exp] 47 / 1e-05 AT3G52120 509 / 1e-179 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Lus10031446 pacid=23155994 polypeptide=Lus10031446 locus=Lus10031446.g ID=Lus10031446.BGIv1.0 annot-version=v1.0 ATGGATCACAGGCGGTACAACAGCGATCACGAAAGGGACAAACGCCGACTTGATGCCGACCAGGAATCGGTTATTGAGGATCTGGGGCAGGAGTTCTGCT TGCCTATAAACTTCAGGCCAACTGAGAATGTGGATCTGGAGAATGTTGAACAAGCATCCCTGGAGACGAAGTTGACATCTTCTAATGTTGGTTTCAGACT TCTTCAGAAAATGGGATGGAAAGGGAAGGGCCTTGGAAAGGACGAGCAAGGAATAGTTGAGCCGATCAAGTCAGGAATTAGAGATGCAAAGTTAGGGCTT GGAAAACAAGAGGAAGATGACTACTTTACTGCTGAAGAAAATATTCAACGCAAGAAACTCGATATTGAAGTTGAGGAAACCGAAGAGAATGCAAAGAAGC GTGAGGTCCTAGCAGAACGCGATAAGAAAATCCAGACCGAGGTGCAAGAAATACGGAAGGTGTTCTATTGTGATCTTTGCAAAAAGCAATACAAATTGGC TATGGAATTTGAGGTCCACCTGAGTTCATATGATCACAATCACCGCAAGAGATTCAAGGAGATGAGGGAGATGCACGGGAGTAGTAGCCGCGATGATCGA CAAAAGCGAGAGTTACAGCGACAGGAAAGAGAAATGGCCAAGTTTGCTCAAATGGCTGATGCACATAAACAGCAGCAGCAGCTTGAGCTCCAACAAGAAG AATCCGGCTCAGCAGCCAAAACTGTGACTTCTTCACTTGGTGATCAGGATCAACGGAAGACATTGAAATTCGGGTTTTCATCTAAAAGCAGCAGTTCAAA GAAGGTAACTCTTACTGCTAGTGCTGCTAAAAGGCCAAAGGTGGTTCTTGCCTCCGTTTTCAAGGACGACAGTGAGGAAGAGTAG
AA sequence Show only first row Show all	>Lus10031446 pacid=23155994 polypeptide=Lus10031446 locus=Lus10031446.g ID=Lus10031446.BGIv1.0 annot-version=v1.0 MDHRRYNSDHERDKRRLDADQESVIEDLGQEFCLPINFRPTENVDLENVEQASLETKLTSSNVGFRLLQKMGWKGKGLGKDEQGIVEPIKSGIRDAKLGL GKQEEDDYFTAEENIQRKKLDIEVEETEENAKKREVLAERDKKIQTEVQEIRKVFYCDLCKKQYKLAMEFEVHLSSYDHNHRKRFKEMREMHGSSSRDDR QKRELQRQEREMAKFAQMADAHKQQQQLELQQEESGSAAKTVTSSLGDQDQRKTLKFGFSSKSSSSKKVTLTASAAKRPKVVLASVFKDDSEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26610			D111/G-patch domain-containing...		Lus10031446 [exp]	0	1
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	1.4	0.9600
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10041295 [exp]	3.2	0.9410
AT1G01750		ADF11	actin depolymerizing factor 11...		Lus10008489 [exp]	3.7	0.9236
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	4.5	0.9506
AT4G27120			unknown protein		Lus10011161 [exp]	4.6	0.9381
AT5G12230		MED19A	unknown protein		Lus10028832 [exp]	4.9	0.9259
AT1G30140			unknown protein		Lus10024751 [exp]	4.9	0.9470
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10041957 [exp]	5.7	0.9346
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10039456 [exp]	6.0	0.9103
					Lus10034398 [exp]	6.0	0.9438

Compare expression of checked genes

Lus10031446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.