Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30030 208 / 1e-62 Eukaryotic aspartyl protease family protein (.1) AT2G23945 201 / 2e-59 Eukaryotic aspartyl protease family protein (.1) AT4G30040 184 / 2e-53 Eukaryotic aspartyl protease family protein (.1) AT5G33340 139 / 1e-36 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 132 / 4e-34 Eukaryotic aspartyl protease family protein (.1) AT3G25700 132 / 6e-34 Eukaryotic aspartyl protease family protein (.1.2) AT4G12920 117 / 6e-29 UND UNDEAD, Eukaryotic aspartyl protease family protein (.1) AT2G03200 113 / 3e-27 Eukaryotic aspartyl protease family protein (.1) AT1G25510 112 / 7e-27 Eukaryotic aspartyl protease family protein (.1) AT2G28030 111 / 7e-27 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031450 [exp] 558 / 0 AT4G30030 231 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10023451 [exp] 467 / 3e-163 AT2G23945 232 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10011615 [exp] 416 / 5e-143 AT2G23945 224 / 5e-68 Eukaryotic aspartyl protease family protein (.1) Lus10015486 [exp] 334 / 9e-110 AT2G23945 248 / 3e-76 Eukaryotic aspartyl protease family protein (.1) Lus10002276 [exp] 259 / 1e-81 AT2G23945 206 / 2e-61 Eukaryotic aspartyl protease family protein (.1) Lus10019960 [exp] 237 / 1e-73 AT2G23945 256 / 5e-81 Eukaryotic aspartyl protease family protein (.1) Lus10002275 [exp] 214 / 1e-64 AT2G23945 164 / 7e-46 Eukaryotic aspartyl protease family protein (.1) Lus10004064 [exp] 218 / 9e-64 AT4G30040 156 / 3e-41 Eukaryotic aspartyl protease family protein (.1) Lus10015487 [exp] 202 / 1e-60 AT2G23945 214 / 7e-65 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179500 [exp] 223 / 4e-68 AT2G23945 412 / 3e-141 Eukaryotic aspartyl protease family protein (.1) Potri.018G106500 [exp] 169 / 4e-48 AT4G30030 150 / 2e-41 Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 130 / 2e-33 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 127 / 3e-32 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 110 / 4e-26 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 109 / 7e-26 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 108 / 2e-25 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 107 / 4e-25 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 107 / 6e-25 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G115900 [exp] 106 / 7e-25 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10031449 pacid=23156019 polypeptide=Lus10031449 locus=Lus10031449.g ID=Lus10031449.BGIv1.0 annot-version=v1.0 ATGGCACCAAAAACACACATCATCCTATTCTTCACATTCTTCTTCTTCAAATATTCCGAAAGCTTGGGACTCACCACAAGAATCATCCACCATGACTCCA TAGTCTCCCCGTTCTACAACGCCTCCGAAACCACGGCCGACCGTGCCTCGAGAGCTACTCGATCGTCCCTCGCACGCGCCATTTACCTTTCTTCAAGATC AGCGTCGACACGGTCGTCGTCGCCTCCGGTGGGGATCCAGGTCAAGCTGTCTGAGGCCACGTCTTACAACGCATTCTACGTCAACTTTTCTATCGGGTAC CCTCCGGTGCAGCAGCTCGCCATTATGGACACCGGCAGCGACTTCCTGTGGGTGAAATGTCTTCCGTGCACTCCTTGCAAGCCAATGGACGGCATCACCT ACTTCGATCCGGCCGAGTCATCCACTTACACCCCATCGCCGTGTACCGAAGTTTGCAAAAAGTGCTACGGACGTTGGCCTTGGTCTACCAGACATTGCAT GTATAAAATCGACTACAACGGCGGGTACCATTCGGAAGGAATATACGCCACTGATCGGCTAGCATTTCGGACCTCCGACGACAAAACCACCTCCGTCCAT AACGTCCACTTCGGTTGCGGCTCTTCGGTCAGCGGAACGAAATGGGTCACTGAAGGTTTCAACGGAGTTTTCGGTCTGGGCACAGGGCACGTTGATTCTC TACTCACCCAGCCTTCTTTCTTCGACCAATTCAATTGGAAGTTTTCTTATAGCATCGGCAACCTAAACGACCCGATTCATACCGACCACCAATTGGCGTT CGGCGACGCTGCCGTATTGAGTGGCACACCTACTCCTTTTTTCTTCCATGATTTCAAGTACCATGTCCACCTTGCCAACATCAGCTTAGGAGACAAGATG TTGGGCATAGGTGTCAGAATGTTCGACAGGATATCGTCATGGAAGCAAGGAGTGGTGATCGATAGCGGAATAACGTTGCTTCATCTCTACACCGAAGTTT ACGATGTGGTGAAGGCCGAGATCAGGAAGCTGGGTCTGGAACAGTTCGAGGGTGTTGCGCCTCCTGACCCGACATTCGAGCTATGCTACAATGGGCACGT AGACGTAGAACCGATCGCGTTTCCGCTGATGAAACTTCACTTCGCCGGGGATGCAATCCTGAGGATGGACGTTAGGTCGATCTTCCGGCAAGTCAACGAC GACACATTTTGCATGGCTATTGTCGAGTCCGATTCAGTTACCTACATTGGGATAATGGCTCAGCAAGATCATAATGTTGGGTTTGATCTGCATAAAGGGT ACATTTATCTCGAGGCCATTTAG
AA sequence Show only first row Show all	>Lus10031449 pacid=23156019 polypeptide=Lus10031449 locus=Lus10031449.g ID=Lus10031449.BGIv1.0 annot-version=v1.0 MAPKTHIILFFTFFFFKYSESLGLTTRIIHHDSIVSPFYNASETTADRASRATRSSLARAIYLSSRSASTRSSSPPVGIQVKLSEATSYNAFYVNFSIGY PPVQQLAIMDTGSDFLWVKCLPCTPCKPMDGITYFDPAESSTYTPSPCTEVCKKCYGRWPWSTRHCMYKIDYNGGYHSEGIYATDRLAFRTSDDKTTSVH NVHFGCGSSVSGTKWVTEGFNGVFGLGTGHVDSLLTQPSFFDQFNWKFSYSIGNLNDPIHTDHQLAFGDAAVLSGTPTPFFFHDFKYHVHLANISLGDKM LGIGVRMFDRISSWKQGVVIDSGITLLHLYTEVYDVVKAEIRKLGLEQFEGVAPPDPTFELCYNGHVDVEPIAFPLMKLHFAGDAILRMDVRSIFRQVND DTFCMAIVESDSVTYIGIMAQQDHNVGFDLHKGYIYLEAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23945			Eukaryotic aspartyl protease f...		Lus10031449 [exp]	0	1

Compare expression of checked genes

Lus10031449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.