Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30030 231 / 3e-71 Eukaryotic aspartyl protease family protein (.1) AT2G23945 202 / 6e-60 Eukaryotic aspartyl protease family protein (.1) AT4G30040 198 / 1e-58 Eukaryotic aspartyl protease family protein (.1) AT5G33340 150 / 1e-40 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 147 / 9e-40 Eukaryotic aspartyl protease family protein (.1) AT1G31450 133 / 2e-34 Eukaryotic aspartyl protease family protein (.1) AT2G35615 132 / 5e-34 Eukaryotic aspartyl protease family protein (.1) AT2G03200 130 / 4e-33 Eukaryotic aspartyl protease family protein (.1) AT2G28030 128 / 5e-33 Eukaryotic aspartyl protease family protein (.1) AT3G25700 128 / 1e-32 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031449 [exp] 568 / 0 AT2G23945 219 / 3e-66 Eukaryotic aspartyl protease family protein (.1) Lus10023451 [exp] 501 / 1e-176 AT2G23945 232 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10011615 [exp] 465 / 3e-162 AT2G23945 224 / 5e-68 Eukaryotic aspartyl protease family protein (.1) Lus10015486 [exp] 368 / 6e-123 AT2G23945 248 / 3e-76 Eukaryotic aspartyl protease family protein (.1) Lus10002276 [exp] 297 / 2e-96 AT2G23945 206 / 2e-61 Eukaryotic aspartyl protease family protein (.1) Lus10019960 [exp] 258 / 1e-81 AT2G23945 256 / 5e-81 Eukaryotic aspartyl protease family protein (.1) Lus10002275 [exp] 255 / 1e-80 AT2G23945 164 / 7e-46 Eukaryotic aspartyl protease family protein (.1) Lus10015487 [exp] 211 / 9e-64 AT2G23945 214 / 7e-65 Eukaryotic aspartyl protease family protein (.1) Lus10004064 [exp] 212 / 1e-61 AT4G30040 156 / 3e-41 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179500 [exp] 243 / 1e-75 AT2G23945 412 / 3e-141 Eukaryotic aspartyl protease family protein (.1) Potri.018G106500 [exp] 161 / 3e-45 AT4G30030 150 / 2e-41 Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 141 / 3e-37 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 128 / 1e-32 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 126 / 6e-32 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 114 / 2e-27 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 111 / 2e-26 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014800 [exp] 110 / 4e-26 AT5G10770 312 / 9e-102 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 107 / 6e-25 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 105 / 1e-24 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10031450 pacid=23156065 polypeptide=Lus10031450 locus=Lus10031450.g ID=Lus10031450.BGIv1.0 annot-version=v1.0 ATGGCACCAAAAGCATCTCTCATCGTCATCTTCATCTTCTTCTTCTTCTTCAAATATTCCGACAGCTTGGGACTCACCACAAGACTCATCCACCACGACT CCATATTCTCCCCGTTCTACAACGCCTCCGAAACCACCGCCGACCGCGCCTGGAGGGCAACGCGATCTTCCCTCGCACGCGCCGCTTACCTTTCTGCAAG GGCGCAACCGCCACCGCCGGGGATCCAGGCCAAGCTGGTTGAGGCCTCGTCTCACAACGCGTTCTTCGTGAACTTCTCTATCGGGAATCCGCCAGTGCCG CAGCTCGCCATTATGGACACCGGGAGCGACTTCGTGTGGGTGAAATGTCTTCCGTGCACTCCTTGCCGCCCGATGCAGGGCGTCACCTACTTTGACCCAT CCCAGTCAACGACTTACTCCCCAAAGCCGTGTGAAGGATACTGCAAAAAGTGCAAAGGCGGACGATGGCCTTGGTCCCCTAAATATTGCATGTACAGAAT ATTTTACTTCGGGAATTACTATTCGGAAGGAATATACGCCACCGAACAACTAACTTTTCGGACCGCCGACGACAAAACCAGGACCGTTGGAGACATCCAA TTCGGCTGTGGCTCTTCGGTGGTCGGAACGAAATGGCGAACTCAAGGTTTCAACGGAGTTTTCGGTCTGAGCATCGGGCACCCTGATTCTTTACTCACCC AAATTTCGTTCTTCAGTCAGTTTAGTTGGAAGTTTTCTTACTGCATCGGCGACCTATCCGACCCGACTTATCCGGACCACCTGTTGGAGTTCGGCAATGC TGCCTATTTGGGAGGCGAACCTACTCCTTTTTACTTCCATGATTTGAAGTACAATGTCCACCTTGTCAACATCAGCTTCGGAGACAAGATGTTGGACATA GACCCCCAAGTGTTCGAAAACATGACAATGGCGAAAGGAGTGGTGATCGATAGCGGAATCACGCTGCTTCACCTCTACAGCAAAGTTTATGATGTGGTGA AGGCCGAGATTGCGGAGCTCGGTTCGAGAATGTTCCGGAGTGTCGCGCCTAGCCTACCATTCGAGCTGTGCTACAAAGGGGACGTAGACCAGGATCCTAT CGGGTTTCCGGTGCTGGAACTTCACTTTGCCAGGGAGGCAAGCTTGAAGATGGACACTAAGGCAATCTTCAAGCAAATCTACGACGACACATTTTGCGTG GCTATTGTTAGGTCGGATTCAGTTACTTACGTTGGGATAATGGCTCAGCAAAGCTATAGTGTCGGGTTTGATCTGTACAATGAGAAGATATATTTTCAGG GCGTTCCGGATTGCAGTATTGATTTCTAG
AA sequence Show only first row Show all	>Lus10031450 pacid=23156065 polypeptide=Lus10031450 locus=Lus10031450.g ID=Lus10031450.BGIv1.0 annot-version=v1.0 MAPKASLIVIFIFFFFFKYSDSLGLTTRLIHHDSIFSPFYNASETTADRAWRATRSSLARAAYLSARAQPPPPGIQAKLVEASSHNAFFVNFSIGNPPVP QLAIMDTGSDFVWVKCLPCTPCRPMQGVTYFDPSQSTTYSPKPCEGYCKKCKGGRWPWSPKYCMYRIFYFGNYYSEGIYATEQLTFRTADDKTRTVGDIQ FGCGSSVVGTKWRTQGFNGVFGLSIGHPDSLLTQISFFSQFSWKFSYCIGDLSDPTYPDHLLEFGNAAYLGGEPTPFYFHDLKYNVHLVNISFGDKMLDI DPQVFENMTMAKGVVIDSGITLLHLYSKVYDVVKAEIAELGSRMFRSVAPSLPFELCYKGDVDQDPIGFPVLELHFAREASLKMDTKAIFKQIYDDTFCV AIVRSDSVTYVGIMAQQSYSVGFDLYNEKIYFQGVPDCSIDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30030			Eukaryotic aspartyl protease f...		Lus10031450 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10032406 [exp]	1.4	0.9368
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	2.4	0.9428
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030663 [exp]	3.5	0.9291
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039454 [exp]	5.7	0.9053
AT3G46570			Glycosyl hydrolase superfamily...		Lus10000070 [exp]	7.1	0.8626
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	8.4	0.8963
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10042907 [exp]	8.7	0.8727
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10001493 [exp]	8.9	0.8693
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	9.2	0.8963
AT4G27290			S-locus lectin protein kinase ...		Lus10034815 [exp]	9.8	0.8913

Compare expression of checked genes

Lus10031450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.