Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011613 [exp] 263 / 7e-88 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G174900 [exp] 421 / 1e-146 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031452 pacid=23155860 polypeptide=Lus10031452 locus=Lus10031452.g ID=Lus10031452.BGIv1.0 annot-version=v1.0 ATGGCCGACGTCATCGGATGGTACGGTCCTCAGATCGATCTCTGCAGAGCGGAGTCTCACGTCGGCGGTTTCGTCCAGCTGCTCGTCTTCATTCACCGCT CCACCCCGGTTCAGTACAAGTTGCCGAAAGGGGGAGAAATAGTTCGGACGGACATTCAGGTCGGCGACGAGTCGCGGCCGTTCTTCGTCGTATCCTTATG GCAGAAGCAGATGGGAGCTCTGGCAGCCGCCGGCGATGTTGTGCTGTTGCAGAATTTGAAGCTTACGAGATTTGGACGAGTTGTGGAGGCCAGAACCGAG CAGTGTTCTTCCCTAATTCGTTTGGTGCATCCTTATCAAACCCTAATTTCTAAAGGCGTTGAAGAACTGATTGAAGAATCTGGAGTGGTGAAAGTAGCCA AGAAAAAGCTTGCAAGACAGAAGAACGTGCAGTGTCGTAACTGGAAGGTACCCGAACGGATTGAACCTCGGACCTTGCGCTCGCTCTCGGAAGTAATGCA CGTAACCACACCCTGCAAGACCGTCTTCAACGGGTTCGTGGGTGAAATTTTCTTACCAATCATCTGGAGATGCCTTGCGGACTCTGAGAAAGAAAAGATG TTCGTCAGCAGGAGAACGACGGTTAAAGATCGGGATCTGGTAGAGGATTTTATCTGTGTTGGCTGCCATTTATGTGGTTCCCCTTTGCAAATGGATTATG GGCTAAACCAGAAGTCTGGTTCTCTCTCTTGCCCAAAGAGCTCGAACAGTATCCATGCAGTAAGTTCGATATATCGTCCGTTTATGGTATACGTGTGGGA TGAATCAGATTATTTGCCTCTCCTAGTAAGGAACAAGGCAGCAGAGCTTCTGTTTGGAAACATCAGAGCTGAAAGAGTGAAATCCTGTTACGATAGATAC GGTGGAATCAAGCAGAAACCGGGTTCTGGCAAGGGCAGCATCAACTTCCATCTCGTTTGGGTGATGCTTCTGAAGATGCTGTTGGAGCAAGGCAAAAACG GTCCATTGAAGTTTGAAGTGGATGTGAATCCAAGCTTAGATAGTGGATATGGCAAGTTTGAGGTCTCGTCTGTGTCGATTCCAGGCAGCCAAACTCGTTT AAATGTTTCATGA
AA sequence Show only first row Show all	>Lus10031452 pacid=23155860 polypeptide=Lus10031452 locus=Lus10031452.g ID=Lus10031452.BGIv1.0 annot-version=v1.0 MADVIGWYGPQIDLCRAESHVGGFVQLLVFIHRSTPVQYKLPKGGEIVRTDIQVGDESRPFFVVSLWQKQMGALAAAGDVVLLQNLKLTRFGRVVEARTE QCSSLIRLVHPYQTLISKGVEELIEESGVVKVAKKKLARQKNVQCRNWKVPERIEPRTLRSLSEVMHVTTPCKTVFNGFVGEIFLPIIWRCLADSEKEKM FVSRRTTVKDRDLVEDFICVGCHLCGSPLQMDYGLNQKSGSLSCPKSSNSIHAVSSIYRPFMVYVWDESDYLPLLVRNKAAELLFGNIRAERVKSCYDRY GGIKQKPGSGKGSINFHLVWVMLLKMLLEQGKNGPLKFEVDVNPSLDSGYGKFEVSSVSIPGSQTRLNVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10031452 [exp]	0	1
AT1G73350			unknown protein		Lus10042294 [exp]	1.0	0.9311
AT3G54460			SNF2 domain-containing protein...		Lus10024158 [exp]	3.2	0.8887
AT3G07870			F-box and associated interacti...		Lus10029527 [exp]	3.5	0.8707
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10036690 [exp]	4.6	0.8667
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10043294 [exp]	4.7	0.8519
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10037876 [exp]	4.9	0.8806
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10036022 [exp]	6.3	0.8731
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10015466 [exp]	7.2	0.8748
AT1G73350			unknown protein		Lus10026363 [exp]	8.0	0.8633
AT3G29270			RING/U-box superfamily protein...		Lus10003473 [exp]	8.8	0.8478

Compare expression of checked genes

Lus10031452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.