Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34180 278 / 4e-94 Cyclase family protein (.1) AT4G35220 275 / 1e-92 Cyclase family protein (.1) AT1G44542 263 / 7e-88 Cyclase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001509 [exp] 485 / 7e-176 AT4G34180 268 / 8e-91 Cyclase family protein (.1) Lus10031454 [exp] 436 / 4e-156 AT4G34180 274 / 1e-92 Cyclase family protein (.1) Lus10001508 [exp] 426 / 6e-152 AT4G34180 281 / 2e-95 Cyclase family protein (.1) Lus10014091 [exp] 276 / 1e-93 AT1G44542 333 / 3e-116 Cyclase family protein (.1) Lus10014092 [exp] 278 / 4e-91 AT4G35220 366 / 3e-125 Cyclase family protein (.1) Lus10019822 [exp] 264 / 2e-88 AT4G35220 396 / 1e-140 Cyclase family protein (.1) Lus10027872 [exp] 256 / 2e-86 AT4G35220 310 / 8e-108 Cyclase family protein (.1) Lus10019823 [exp] 98 / 7e-26 AT4G35220 110 / 2e-31 Cyclase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G097300 [exp] 280 / 5e-95 AT4G35220 343 / 6e-120 Cyclase family protein (.1) Potri.001G301700 [exp] 273 / 4e-92 AT4G35220 348 / 1e-121 Cyclase family protein (.1) Potri.001G301600 [exp] 272 / 2e-91 AT4G35220 363 / 1e-127 Cyclase family protein (.1) Potri.001G301501 [exp] 267 / 2e-89 AT4G35220 397 / 4e-141 Cyclase family protein (.1) Potri.009G097201 [exp] 231 / 1e-76 AT4G35220 291 / 1e-100 Cyclase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF04199 [flax] [poplar] Cyclase Putative cyclase
Representative CDS sequence Show only first row Show all	>Lus10031453 pacid=23155932 polypeptide=Lus10031453 locus=Lus10031453.g ID=Lus10031453.BGIv1.0 annot-version=v1.0 ATGAGCAAGCAACTAATTGTGTCTCAGTTCCTTTTGGTAATCCTGCTAGTAGGAGGCATTCGGGGAAGCGATGCCGACGGCGAGATAAATCCGTGCTCAC CTACCAAAGTGCCACCGGCACAAGAGAGGGAGGTGTACGATGACGGTAGGCTGATCGACGTCACCCACAGGGTGACCCCGGAGATGCCAAAGTTCGGCAA GGATACCGGAGTGGGGACAGTGGTTGCACTTGTTGAGAGGCTCCTAGATGGAGACCTGGCCAACGTGGGCGAGATCAATAAACTCGGTACTCATACCGGA ACCCACGTCGATTCCCCTGGCCATTTCTGTCAGGACTATTATGTAACTGGTTACACTGTTGGATCCCTTGACTTGTACACCCTTAATGGTCCGGCATTAG TGGTTGAAGTTCCTCGAGACAGTAACATAACCGATAAGGTGATGGAGTCGTTGAACATCCCGGAAGGAACAGAGCGTGTGCTCTTTAGAACTCTCAATAC TGATAGGAAACTCATGAAGAAAACAAAGTTCGATTCGAGTTACACCGGATTCACAACCAGCGGAGCTAAGTGGCTTGTTGAGAACACAGACATCCAGCTT GTAGGTATCGACTACTTATCTGTTTCGATAGTGGACGATGCCACACCAGTTCATCGCGAATTCCTCAAGGGCAGGGACATTATTCCGGTGGAAGGGATGA ATCTCGACAACGTTAAAGCAGGGGAGTACGATGTTCATTGTCTGCCTCTGAGGTTGATCGGAGCCGATGCAACTCCGTCTCGATGCATCGTTATCAAAAC AAATCTCAAGAGGGCACAATTGCTTGACATGCATGAATGA
AA sequence Show only first row Show all	>Lus10031453 pacid=23155932 polypeptide=Lus10031453 locus=Lus10031453.g ID=Lus10031453.BGIv1.0 annot-version=v1.0 MSKQLIVSQFLLVILLVGGIRGSDADGEINPCSPTKVPPAQEREVYDDGRLIDVTHRVTPEMPKFGKDTGVGTVVALVERLLDGDLANVGEINKLGTHTG THVDSPGHFCQDYYVTGYTVGSLDLYTLNGPALVVEVPRDSNITDKVMESLNIPEGTERVLFRTLNTDRKLMKKTKFDSSYTGFTTSGAKWLVENTDIQL VGIDYLSVSIVDDATPVHREFLKGRDIIPVEGMNLDNVKAGEYDVHCLPLRLIGADATPSRCIVIKTNLKRAQLLDMHE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34180			Cyclase family protein (.1)		Lus10031453 [exp]	0	1
AT4G34180			Cyclase family protein (.1)		Lus10001509 [exp]	1.0	0.9984
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039541 [exp]	2.0	0.9945
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10014184 [exp]	4.9	0.9778
					Lus10007415 [exp]	5.3	0.9757
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10032425 [exp]	7.4	0.9718
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10007243 [exp]	7.5	0.9699
AT4G02690			Bax inhibitor-1 family protein...		Lus10004078 [exp]	7.5	0.9696
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10038790 [exp]	7.7	0.9656
AT2G42760			unknown protein		Lus10029248 [exp]	9.4	0.9397
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	11.5	0.9705

Compare expression of checked genes

Lus10031453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.