Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34180 265 / 4e-89 Cyclase family protein (.1) AT4G35220 263 / 3e-88 Cyclase family protein (.1) AT1G44542 252 / 1e-83 Cyclase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001508 [exp] 489 / 3e-177 AT4G34180 281 / 2e-95 Cyclase family protein (.1) Lus10031453 [exp] 414 / 3e-147 AT4G34180 278 / 4e-94 Cyclase family protein (.1) Lus10001509 [exp] 389 / 9e-138 AT4G34180 268 / 8e-91 Cyclase family protein (.1) Lus10014091 [exp] 270 / 5e-91 AT1G44542 333 / 3e-116 Cyclase family protein (.1) Lus10014092 [exp] 262 / 7e-85 AT4G35220 366 / 3e-125 Cyclase family protein (.1) Lus10019822 [exp] 249 / 2e-82 AT4G35220 396 / 1e-140 Cyclase family protein (.1) Lus10027872 [exp] 245 / 5e-82 AT4G35220 310 / 8e-108 Cyclase family protein (.1) Lus10019823 [exp] 102 / 3e-27 AT4G35220 110 / 2e-31 Cyclase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G097300 [exp] 263 / 3e-88 AT4G35220 343 / 6e-120 Cyclase family protein (.1) Potri.001G301501 [exp] 262 / 1e-87 AT4G35220 397 / 4e-141 Cyclase family protein (.1) Potri.001G301600 [exp] 259 / 1e-86 AT4G35220 363 / 1e-127 Cyclase family protein (.1) Potri.001G301700 [exp] 255 / 8e-85 AT4G35220 348 / 1e-121 Cyclase family protein (.1) Potri.009G097201 [exp] 235 / 2e-78 AT4G35220 291 / 1e-100 Cyclase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF04199 [flax] [poplar] Cyclase Putative cyclase
Representative CDS sequence Show only first row Show all	>Lus10031454 pacid=23155958 polypeptide=Lus10031454 locus=Lus10031454.g ID=Lus10031454.BGIv1.0 annot-version=v1.0 ATGAGCAAGCAACAAATTTTATCTCCCAAGTTCCTTTTGGTCATTGTACTAGTAGGAGGCATTTTGGGAAGCGACGCAGACGGAGATGTAACGCCGTGCT CGAAGGTCAAAGTGCCGCCGGCTAAAGAGAGGGAGGTGTACGGCGAGGGCGGCCGGCTGATCGACATCACCCACAGGGTGACCCCGGAGATGCCGAAATT CGGGGTCGAGACCGGGGTGGGGACCGTTTATACAGTCACCGAGAGTATGTTGGACGGGTACTTGGCCAATGTCGGGGAGTTTAATAACCTCGGTACTCAT ACCGGAACCCACGTGGATACGCCCGGCCATTTCTGCCAGGACTATTTTGATACTGGCTACACCGTTGGATCGCTTGACTTGGACACCCTTAATGGTCCGG CATTAGTGGTTGAAGTTCCTCGGCACAGTAACATAACCGATAAGGTGATGGAATCATTGAACATTCCGAAAGGAACAAAGCGTGTGCTCTTCAGAACTCT CAATACTGATAGGCAACTGATGAAGAAGACGAAGTTCGATTCGACTTACACCGGGTTCAGAACCAGTGGAGCTGAATGGCTAGTAAAGAACACAGACATC AAGCTTGTAGGAATCGACTACTTATCTGTTTCGATAGTCGATGATGCTGCACCAGTTCACCGCGAATTCCTCAAGGGCAGGGACATTATTCCGGTGGAAG GGTTGAATCTCGACAACGTCAAAGCAGGGGTGTACGATGTTCACTGTCTGCCTCTGAGGGTGATCGGAGCTGATGGAACTCCGTCTCGATGCATCGCCAT CAAACCCGAACTCAAGAGTGCCATTATGTGA
AA sequence Show only first row Show all	>Lus10031454 pacid=23155958 polypeptide=Lus10031454 locus=Lus10031454.g ID=Lus10031454.BGIv1.0 annot-version=v1.0 MSKQQILSPKFLLVIVLVGGILGSDADGDVTPCSKVKVPPAKEREVYGEGGRLIDITHRVTPEMPKFGVETGVGTVYTVTESMLDGYLANVGEFNNLGTH TGTHVDTPGHFCQDYFDTGYTVGSLDLDTLNGPALVVEVPRHSNITDKVMESLNIPKGTKRVLFRTLNTDRQLMKKTKFDSTYTGFRTSGAEWLVKNTDI KLVGIDYLSVSIVDDAAPVHREFLKGRDIIPVEGLNLDNVKAGVYDVHCLPLRVIGADGTPSRCIAIKPELKSAIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34180			Cyclase family protein (.1)		Lus10031454 [exp]	0	1
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Lus10009704 [exp]	2.8	0.7953
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10034952 [exp]	4.2	0.8225
AT5G51010			Rubredoxin-like superfamily pr...		Lus10027889 [exp]	7.1	0.7915
AT3G13180			NOL1/NOP2/sun family protein /...		Lus10022523 [exp]	11.0	0.8026
					Lus10027391 [exp]	12.7	0.7850
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10006191 [exp]	18.2	0.7653
AT3G55040		GSTL2	glutathione transferase lambda...		Lus10040347 [exp]	21.2	0.8034
AT1G03910			unknown protein		Lus10030000 [exp]	23.0	0.7407
AT1G26930			Galactose oxidase/kelch repeat...		Lus10024239 [exp]	23.7	0.7725
					Lus10022623 [exp]	28.3	0.7147

Compare expression of checked genes

Lus10031454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.