Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50890 477 / 9e-169 alpha/beta-Hydrolases superfamily protein (.1) AT2G05260 166 / 7e-48 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G24230 162 / 2e-46 Lipase class 3-related protein (.1) AT4G10955 160 / 9e-46 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G24220 146 / 2e-40 Lipase class 3-related protein (.1) AT5G24180 142 / 9e-39 Lipase class 3-related protein (.1) AT5G24200 135 / 1e-36 alpha/beta-Hydrolases superfamily protein (.1) AT5G24210 119 / 2e-30 alpha/beta-Hydrolases superfamily protein (.1) AT5G24190 72 / 4e-14 Lipase class 3-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001506 [exp] 701 / 0 AT5G50890 469 / 1e-165 alpha/beta-Hydrolases superfamily protein (.1) Lus10007331 [exp] 573 / 0 AT5G50890 487 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1) Lus10020755 [exp] 566 / 0 AT5G50890 494 / 5e-175 alpha/beta-Hydrolases superfamily protein (.1) Lus10001819 [exp] 175 / 2e-51 AT4G10955 444 / 4e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10003188 [exp] 174 / 5e-51 AT4G10955 456 / 7e-162 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10023072 [exp] 165 / 2e-47 AT4G10955 441 / 2e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018097 [exp] 160 / 8e-46 AT5G24230 357 / 2e-122 Lipase class 3-related protein (.1) Lus10022416 [exp] 137 / 9e-38 AT5G24230 268 / 7e-89 Lipase class 3-related protein (.1) Lus10032396 [exp] 117 / 8e-30 AT4G10955 206 / 3e-102 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204100 [exp] 512 / 0 AT5G50890 537 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G058100 [exp] 501 / 9e-179 AT5G50890 550 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G090500 [exp] 169 / 3e-49 AT4G10955 472 / 9e-168 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G141100 [exp] 166 / 3e-48 AT4G10955 464 / 7e-165 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031455 pacid=23155801 polypeptide=Lus10031455 locus=Lus10031455.g ID=Lus10031455.BGIv1.0 annot-version=v1.0 ATGGTGGCAGGGGAACAGCAGAATGACGCCGTCCAAGTGCTGGAAGTTACTCCGGCTGTTGCTTCGGCAGCGCCACCGCACCCTTACGCGTTTCACGTCT CCGGCCCACGCAATGTCGCGTCTCTTAACTGGAGAGACCTCATCAGTTCCAGTTGGAAAGACGCCAACTACAAGAGGACAGTATTAGCATGCTTCATCCA AGCAGTCTACTTGCTAGAACTCGACAGGCAAGAAAACAGGACACCAGAAACTGCTCTAGCTCCAACATGGTGGACAAGGTTCAAGTACAGGCTCACCCGA ACGCTGACCGACGAAAGGGACGGGTCCATATTCGGTGCCATCTTCGAATGGGACCGATCGGCAGCAGTTTCTGACATGATCTTCGTAAGGCCCAGTGGGG CTCCAAGGGCAGTCCTCGCACTGCGTGGGACCTTGCTCAAGGGTCCCACGATGCGACGAGACATCGAGGACGACCTCCGATTCCTCGCTTGGGAAAGCCT CAAGGGCTCGATCCGATTTAACGTGGCCCTGGAGGCGTTGAGGTCGGTCGCTCAGAGGTACGGTGGGAGCAATGTGTGTGTTGCAGGCCATTCCCTCGGA GCCGGGTTTGCTCTCCAGGTCGGCAAAGCATTAGCTAAAGAAAAGATGTTCGTGGATGCACATCTGTTCAACCCGCCTTCCGTCTCTCTAGCAATGAGCT TCAGGAATTTCGGGGAGAGAGCTGAGTTTGCCTGGAAGAAGTTGAAAGCAATGCTTCCTTATGCTGCTTCTGTCGAAACCTCAGTTGCTTCCGAGATGCA GAACAGTTCGAATGCGATGGGGTCGAAGAAATGGGTGCCGCATTTGTATGTGAACAACAGTGATTACATATGCTGTCAGTACACCAGTCCAGAAGACGGA AATGGTAGTAGTAACATCGGTCAGGTTTCGGCGAAGCTGTTCGTGATGGCGAAGGAGAAACAGAAGTTTCTCGAGGCGCACGGATTGGAGCAATGGTGGT CTGCTGATGCTGATCAGGGGTTGCTGAAATCAGGAATCCCCAGTAGTAAGCTTATGAACAGGCAGTTGAGGTCTTTGTATAACCTGCCAGCTCAGCCATG TTAA
AA sequence Show only first row Show all	>Lus10031455 pacid=23155801 polypeptide=Lus10031455 locus=Lus10031455.g ID=Lus10031455.BGIv1.0 annot-version=v1.0 MVAGEQQNDAVQVLEVTPAVASAAPPHPYAFHVSGPRNVASLNWRDLISSSWKDANYKRTVLACFIQAVYLLELDRQENRTPETALAPTWWTRFKYRLTR TLTDERDGSIFGAIFEWDRSAAVSDMIFVRPSGAPRAVLALRGTLLKGPTMRRDIEDDLRFLAWESLKGSIRFNVALEALRSVAQRYGGSNVCVAGHSLG AGFALQVGKALAKEKMFVDAHLFNPPSVSLAMSFRNFGERAEFAWKKLKAMLPYAASVETSVASEMQNSSNAMGSKKWVPHLYVNNSDYICCQYTSPEDG NGSSNIGQVSAKLFVMAKEKQKFLEAHGLEQWWSADADQGLLKSGIPSSKLMNRQLRSLYNLPAQPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10031455 [exp]	0	1
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10011827 [exp]	1.4	0.9520
AT5G53110			RING/U-box superfamily protein...		Lus10007845 [exp]	2.2	0.9362
AT5G27690			Heavy metal transport/detoxifi...		Lus10033469 [exp]	2.8	0.9432
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10014518 [exp]	4.5	0.9366
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010766 [exp]	6.0	0.9346
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10013552 [exp]	6.2	0.9403
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10034025 [exp]	7.1	0.9253
AT1G24620			EF hand calcium-binding protei...		Lus10007816 [exp]	7.9	0.9272
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	9.4	0.9322
AT1G76130		ATAMY2, AMY2	ARABIDOPSIS THALIANA ALPHA-AMY...		Lus10021836 [exp]	9.8	0.8986

Compare expression of checked genes

Lus10031455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.