Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11820 741 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G01630 502 / 9e-175 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 484 / 7e-168 O-Glycosyl hydrolases family 17 protein (.1) AT3G13560 414 / 3e-140 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT2G05790 335 / 8e-110 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 312 / 5e-100 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G56590 301 / 4e-96 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 296 / 1e-94 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 292 / 2e-93 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 275 / 4e-86 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013465 [exp] 520 / 0 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002295 [exp] 509 / 2e-177 AT1G66250 753 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004044 [exp] 506 / 6e-176 AT1G66250 752 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10007929 [exp] 503 / 9e-176 AT2G01630 730 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034607 [exp] 489 / 4e-170 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039179 [exp] 415 / 2e-140 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10013758 [exp] 377 / 4e-126 AT3G13560 595 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10015151 [exp] 321 / 3e-104 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032562 [exp] 316 / 2e-102 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G010500 [exp] 747 / 0 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.011G006100 [exp] 745 / 0 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.010G108500 [exp] 521 / 0 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.017G130200 [exp] 520 / 0 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G086400 [exp] 516 / 4e-180 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G133200 [exp] 508 / 3e-177 AT2G01630 721 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.001G006500 [exp] 413 / 6e-140 AT3G13560 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.003G218500 [exp] 409 / 2e-138 AT3G13560 594 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.002G224600 [exp] 321 / 3e-104 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 320 / 4e-104 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10031456 pacid=23155974 polypeptide=Lus10031456 locus=Lus10031456.g ID=Lus10031456.BGIv1.0 annot-version=v1.0 ATGTCGCCGGCGACTCCTCCTAAGCTCCTCTTCCTCTTCATTTCCTCCTTACTCATCCTGTTCCTCTATCCAGGTAATGAATCATCAGCAACTGTAGTTG CTTCATCTGATCAGGACAAGGAGCCATTCGTGGGGTTTAACATAGGCACAGACGTCTCCAACCTCTTATCAGCGGCTGAATTAGTGAGTTTCCTTCAATT ACAGAAGATCACTCATATCCGTCTTTATGACGCTAATCCTGATATACTAAAAGCACTGGCCAAAACCAAGATCCGAGTAACCATCAGTGTCCCGAATAAC CAGCTTCTCGGCATTGGCTCATCAAACACCACAGCAGTTTCCTGGATCACCCACAATGTTGTTGCTTACTACCCGAGGACTCTAATCACAGCCATTGCTG TAGGTGATGAGGTTCTCACCACGGTCCAATCTTCCGCCCCTTTGCTAATGCCGGCTATTGAATCACTTTATTCTGCTTTAGTTGCTTCGAATTTGCATAC CGAGATCAAGATCTCCACTCCTCACGCCACTTCCATAATTCTCGATCCGTTCCCGCCTTCTCAGTCGTTTTTCAACCAGAGTTTGAGCTCGAACCAGAGT TTGACCTCTGTTATGGTCCCGTTGCTTCAGTTCTTATCCAGAACCGGTTCGCCATTGATGATGAATCTCTACCCTTACTATGTGTTCATGCAAAACAAAG GAGTTGTCCCTCTTGACAACTCCTTGTTCAAGCCCCTGACTCCTTCTAAAGAGATGGTTGATCCCAACACTTTGTTACACTACACGAATGTCCTCGATGC CATGATCGATGCTGCATACTTCTCCATGAAGAACTTGAACATCACTGACGTGGTGGTCCTTGTGACCGAAACCGGTTGGCCTTCCAAGGGCGATTCTTCC AAAGAGCCTTATGCCACAGTGGATAATGCAGATACGTATAACTCGAATCTGATCAAGCATGTTCTTGACAAGAGTGGCACTCCTTTGCATCCCGAGGTTA CTTCTAATGTGTACATATATGAGTTGTTCAATGAGGATCTGAGGTCTCCACCCGTGTCGGAAGCCAACTGGGGGTTGTTCTATGGGAACTCGACGTCTGT GTATCTGCTTTCTGTGTCAGGGAGTGGGGGGTTTTTGGCCAATGACTCGACGAATCAGACGTACTGTATAGCGACGGATGATGTGGATGGGAAGACGTTG CAAGCAGCGTTGGATTGGGCGTGTGGACCTGGGAGGGCGAATTGTAGTGAGGTTCAGCCGGGTGAAGCTTGTTACCAGCCGAATAATGTGAAGAACCATG CTTCTTATGCATTTGATAGCTATTACCAGAAGGAAGGGAAGTCCTCTGGAGCTTGTGATTTCAAGGGTGTTGGCATGGTCACCACCACTGACCCAAGTCA TGGGAGCTGTATATTTCCTGGAAGCAAGAGAATAAGCAATAAGACAAAAACAGTGGTGAATTCAACTACTCAATCCAGTAGCGGAGCGCATTCGTACTCT CCAATAACTTCCATCCACAACACTACTGCCAACTCTGCAGTTGTAATTGTATTGTTCTGTATCTTATGGCTCCTTCTTCTTCTTCTGTAA
AA sequence Show only first row Show all	>Lus10031456 pacid=23155974 polypeptide=Lus10031456 locus=Lus10031456.g ID=Lus10031456.BGIv1.0 annot-version=v1.0 MSPATPPKLLFLFISSLLILFLYPGNESSATVVASSDQDKEPFVGFNIGTDVSNLLSAAELVSFLQLQKITHIRLYDANPDILKALAKTKIRVTISVPNN QLLGIGSSNTTAVSWITHNVVAYYPRTLITAIAVGDEVLTTVQSSAPLLMPAIESLYSALVASNLHTEIKISTPHATSIILDPFPPSQSFFNQSLSSNQS LTSVMVPLLQFLSRTGSPLMMNLYPYYVFMQNKGVVPLDNSLFKPLTPSKEMVDPNTLLHYTNVLDAMIDAAYFSMKNLNITDVVVLVTETGWPSKGDSS KEPYATVDNADTYNSNLIKHVLDKSGTPLHPEVTSNVYIYELFNEDLRSPPVSEANWGLFYGNSTSVYLLSVSGSGGFLANDSTNQTYCIATDDVDGKTL QAALDWACGPGRANCSEVQPGEACYQPNNVKNHASYAFDSYYQKEGKSSGACDFKGVGMVTTTDPSHGSCIFPGSKRISNKTKTVVNSTTQSSSGAHSYS PITSIHNTTANSAVVIVLFCILWLLLLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	0	1
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	3.0	0.8794
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10005249 [exp]	4.5	0.8474
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Lus10002193 [exp]	6.0	0.8451
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10009184 [exp]	6.3	0.8645
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Lus10037109 [exp]	6.8	0.8274
AT5G05810		ATL43	RING/U-box superfamily protein...		Lus10024248 [exp]	7.7	0.8415
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	8.1	0.8600
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10009112 [exp]	8.1	0.8467
AT2G40980			Protein kinase superfamily pro...		Lus10037692 [exp]	9.4	0.8492
AT5G57100			Nucleotide/sugar transporter f...		Lus10020017 [exp]	9.6	0.8706

Compare expression of checked genes

Lus10031456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.