Plant FIBer expression Database

Lus10031457 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06510 163 / 1e-49 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001505
[exp]
330 / 2e-115 AT1G06510 202 / 2e-64 unknown protein
Lus10031459
[exp]
323 / 6e-114 AT1G06510 148 / 9e-45 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G203100
[exp]
171 / 2e-52 AT1G06510 249 / 3e-82 unknown protein
PFAM info
Representative CDS sequence
>Lus10031457 pacid=23156063 polypeptide=Lus10031457 locus=Lus10031457.g ID=Lus10031457.BGIv1.0 annot-version=v1.0
ATGATGTTGCAGTTGCAAGGAGGGGGTTATGCTCCTTGTCTTGCTAGCTCAGTTTATTGCAGGCTCAGATCCTCCCGACGGCAGCCGCCAGGTATCCCCA
CCGTGTCTTGCTTCGCTTCCAATACCGACCCTCTCCGATCCCAGCTTTACCAACTCCGCTCCGAAGCCGACTCCGCCAGAGCCGACGCCAATAGTGCAAG
GCTGAGGTTGATGCGGTTGTCGGAGGCAGCAGAGAACCTTAAACGACAGGCAGCTGTCTGCGTTCAGTCCCGACGAGAGGACGAGGCAAGGGAACTGCTT
TTCCAAAAGAAGAAGGTTATGCAGGCTATTGACAAGTCCAAGAGTCGCATTGAATTGCTCGATGAGCTCTGTTCTAAACTCAACGAGGCCATCTCTAGCA
AAGAAAGCCAACTGATTGGCAATCTTGGTTCGGATCTTGATGTTGATCCGGTAGAAAATGCTGCTTCTGGTCCAGTTCGAGTCGTACCTCCCAAGGCTGA
AGAATTAAGTGGCGTGTCCTCTTACTATGGCTTTTTGGAGCGGACGGATGTACAGCTTAGCAAGATCGAAGCGCAGCTACTCACCATTCTGAATGATGAA
GAGAAGCCTGATAATTTGAAAGTGAACCAAACGAAAGAGCTTCTCGTTAGCATCCGTGGCATTCGACAGCAAGTTGCTGAGATGCTGGAAGGTAAGGTTG
AATCCTGA
AA sequence
>Lus10031457 pacid=23156063 polypeptide=Lus10031457 locus=Lus10031457.g ID=Lus10031457.BGIv1.0 annot-version=v1.0
MMLQLQGGGYAPCLASSVYCRLRSSRRQPPGIPTVSCFASNTDPLRSQLYQLRSEADSARADANSARLRLMRLSEAAENLKRQAAVCVQSRREDEARELL
FQKKKVMQAIDKSKSRIELLDELCSKLNEAISSKESQLIGNLGSDLDVDPVENAASGPVRVVPPKAEELSGVSSYYGFLERTDVQLSKIEAQLLTILNDE
EKPDNLKVNQTKELLVSIRGIRQQVAEMLEGKVES

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G06510 unknown protein Lus10031457
[exp]
0 1
AT4G14480 Protein kinase superfamily pro... Lus10021882
[exp]
9.3 0.7235
AT2G46760 D-arabinono-1,4-lactone oxidas... Lus10002688
[exp]
12.5 0.7230
AT5G22120 unknown protein Lus10004788
[exp]
13.1 0.6760
AT2G40540 ATKUP2, ATKT2, ... potassium transporter 2 (.1.2) Lus10018270
[exp]
22.3 0.6562
Lus10035963
[exp]
22.7 0.6714
AT5G47750 PK5, D6PKL2 D6 protein kinase like 2 (.1) Lus10016629
[exp]
27.5 0.6521
AT5G25170 PPPDE putative thiol peptidase... Lus10017127
[exp]
28.9 0.6005
AT4G00330 CRCK2 calmodulin-binding receptor-li... Lus10018828
[exp]
29.1 0.6685
AT3G03550 RING/U-box superfamily protein... Lus10035677
[exp]
34.7 0.6636
AT1G66140 C2H2ZnF ZFP4 zinc finger protein 4 (.1) Lus10030764
[exp]
40.2 0.6506

Lus10031457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.