Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42940 152 / 4e-46 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G22810 145 / 7e-43 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G45430 145 / 1e-42 AT-hook AHL22 AT-hook motif nuclear-localized protein 22 (.1) AT2G35270 138 / 3e-40 AT-hook GIK, 2-ATH, AHL21 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) AT4G12050 137 / 1e-39 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G17800 133 / 3e-38 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G14465 129 / 9e-37 AT-hook AHL20 AT-hook motif nuclear-localized protein 20 (.1) AT3G04570 129 / 9e-37 AT-hook AHL19 AT-hook motif nuclear-localized protein 19 (.1) AT1G76500 125 / 3e-35 AT-hook SOB3, AHL29 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1) AT3G60870 121 / 6e-34 AT-hook AHL18 AT-hook motif nuclear-localized protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031460 [exp] 222 / 1e-74 AT2G42940 214 / 1e-70 Predicted AT-hook DNA-binding family protein (.1) Lus10020763 [exp] 179 / 2e-56 AT2G42940 294 / 1e-100 Predicted AT-hook DNA-binding family protein (.1) Lus10006577 [exp] 135 / 4e-39 AT3G04570 270 / 1e-89 AT-hook motif nuclear-localized protein 19 (.1) Lus10042551 [exp] 127 / 3e-36 AT3G04570 202 / 4e-64 AT-hook motif nuclear-localized protein 19 (.1) Lus10009301 [exp] 127 / 5e-36 AT3G60870 223 / 4e-72 AT-hook motif nuclear-localized protein 18 (.1) Lus10015862 [exp] 127 / 7e-36 AT3G60870 227 / 1e-73 AT-hook motif nuclear-localized protein 18 (.1) Lus10000519 [exp] 124 / 6e-35 AT2G35270 205 / 1e-64 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) Lus10002711 [exp] 122 / 6e-34 AT4G14465 211 / 1e-66 AT-hook motif nuclear-localized protein 20 (.1) Lus10022010 [exp] 116 / 3e-32 AT4G14465 198 / 7e-63 AT-hook motif nuclear-localized protein 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059400 [exp] 166 / 2e-51 AT2G42940 311 / 2e-107 Predicted AT-hook DNA-binding family protein (.1) Potri.005G202700 [exp] 164 / 7e-51 AT2G42940 305 / 3e-105 Predicted AT-hook DNA-binding family protein (.1) Potri.003G116900 [exp] 150 / 4e-45 AT4G22810 258 / 5e-85 Predicted AT-hook DNA-binding family protein (.1) Potri.001G115200 [exp] 150 / 8e-45 AT4G22810 254 / 1e-83 Predicted AT-hook DNA-binding family protein (.1) Potri.010G074201 [exp] 148 / 2e-44 AT4G14465 256 / 3e-85 AT-hook motif nuclear-localized protein 20 (.1) Potri.002G149300 [exp] 148 / 3e-44 AT2G45430 226 / 1e-72 AT-hook motif nuclear-localized protein 22 (.1) Potri.013G044500 [exp] 146 / 2e-43 AT4G14465 162 / 3e-48 AT-hook motif nuclear-localized protein 20 (.1) Potri.014G070800 [exp] 144 / 1e-42 AT2G45430 222 / 5e-71 AT-hook motif nuclear-localized protein 22 (.1) Potri.001G142800 [exp] 139 / 2e-40 AT4G17800 300 / 6e-102 Predicted AT-hook DNA-binding family protein (.1) Potri.005G257200 [exp] 137 / 9e-40 AT1G76500 192 / 2e-59 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10031458 pacid=23155823 polypeptide=Lus10031458 locus=Lus10031458.g ID=Lus10031458.BGIv1.0 annot-version=v1.0 ATGGGTGGATGCGCCGATCGAAACAACACTCCTGCAGTCAGGCGGCCGCGAGGGAGGCCAGCCGGCTCGAAAAACAAGCCGAAGCCACCGATCTTCGTCA CTCGAGACAGCGCCAGCGCCCTCCGCGCGCAAGCAATGGAGGTGAGCTCCGGATGCGATGTGGGCGAGAGTTTGGTCGACTACGCGAGGAGGAACCAGCG CGGGATGTGCGTTCTCAGCGGGAGTGGACACGTTACGAATGTGAAACTGAGGCAGCCTGGAGGAGGAGGAGGAGGCAATATTGTGACCACCCTCCATGGC AGGTTCGAGATACTTTCGTTGCTCGGATCGATATTGCCCCCACCAGCTGCGCCTTCAGGGATTACCGGGCTGACCATATACCTGGCGGGTGGTCAGGGGC AGGTGGTTGGTGGATGTGTGGTCGGGAAGCTGATAGCTTCCGGTCCTGTCGTGGTGATGGCAGCGTCGTTTGCGAATGCGAGTTTCGATCGGTTGCCTCT GGATGAGGAGGAAGATGTTTGTGATGTTTATGGAGTGCCTAAAAACTGTAATACATAG
AA sequence Show only first row Show all	>Lus10031458 pacid=23155823 polypeptide=Lus10031458 locus=Lus10031458.g ID=Lus10031458.BGIv1.0 annot-version=v1.0 MGGCADRNNTPAVRRPRGRPAGSKNKPKPPIFVTRDSASALRAQAMEVSSGCDVGESLVDYARRNQRGMCVLSGSGHVTNVKLRQPGGGGGGNIVTTLHG RFEILSLLGSILPPPAAPSGITGLTIYLAGGQGQVVGGCVVGKLIASGPVVVMAASFANASFDRLPLDEEEDVCDVYGVPKNCNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10031458 [exp]	0	1
AT3G15580		APG8H, ATG8I	AUTOPHAGY 8I, AUTOPHAGY 8H, Ub...		Lus10038046 [exp]	1.4	0.8539
AT2G45990			unknown protein		Lus10036369 [exp]	6.2	0.8651
AT5G48840		ATPTS, PANC	ARABIDOPSIS THALIANA PANTOTHEN...		Lus10025932 [exp]	6.9	0.8357
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10036939 [exp]	7.5	0.8071
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10041796 [exp]	10.4	0.8285
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042936 [exp]	11.6	0.8161
AT4G28706			pfkB-like carbohydrate kinase ...		Lus10011270 [exp]	12.6	0.8066
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10015918 [exp]	12.8	0.8404
AT3G13880			Tetratricopeptide repeat (TPR)...		Lus10014009 [exp]	13.4	0.7934
AT3G61113			Ubiquitin related modifier 1 (...		Lus10036551 [exp]	16.3	0.8357

Compare expression of checked genes

Lus10031458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.