Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06510 148 / 9e-45 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031457 [exp] 324 / 2e-114 AT1G06510 192 / 5e-61 unknown protein Lus10001505 [exp] 267 / 9e-92 AT1G06510 202 / 2e-64 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G203100 [exp] 159 / 1e-48 AT1G06510 249 / 3e-82 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031459 pacid=23155883 polypeptide=Lus10031459 locus=Lus10031459.g ID=Lus10031459.BGIv1.0 annot-version=v1.0 ATGCGGTTGTCGGAGGCAGCAGAGAACCTTAAACGACAGGCAGCTGTCTGCGTTCAGTCCCGACGAGAGGACGAGGCAAGGGAACTGCTTTTCCAAAAGA AGAAGGTTATGCAGGCTATTGACAAGTCCAAGAGTCGCATTGAATTGCTCGATGAGCTCTGTTCTAAACTCAACGAGGCCATCTCTAGCAAAGAAAGCCA ACTGATTGGCAATCTTGGTTCGGATCTTGATGTTGATCCGGTAGAAAATGCTGCTTCTGGTCCAGTTCGAGTCGTACCTCCCAAGGCTGAAGAATTAAGT GGCGTGTCCTCTTACTATGGCTTTTTGGAGCGGACGGATGTACAGCTTAGCAAGATCGAAGCGCAGCTACTCACCATTCTGAATGATGAAGAGAAGCCTG ATAATTTGAATGTGAACCAAACGAAAGAGCTTCTCGTTAGCATCCGTGGCATTCGACAGCAAGTTGCTGAGATGCTGGAAGGTAAGGTTGAATCCTGA
AA sequence Show only first row Show all	>Lus10031459 pacid=23155883 polypeptide=Lus10031459 locus=Lus10031459.g ID=Lus10031459.BGIv1.0 annot-version=v1.0 MRLSEAAENLKRQAAVCVQSRREDEARELLFQKKKVMQAIDKSKSRIELLDELCSKLNEAISSKESQLIGNLGSDLDVDPVENAASGPVRVVPPKAEELS GVSSYYGFLERTDVQLSKIEAQLLTILNDEEKPDNLNVNQTKELLVSIRGIRQQVAEMLEGKVES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06510			unknown protein		Lus10031459 [exp]	0	1
AT1G26930			Galactose oxidase/kelch repeat...		Lus10024239 [exp]	6.5	0.8283
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10033026 [exp]	8.7	0.8366
AT5G63050		EMB2759	embryo defective 2759 (.1.2)		Lus10001245 [exp]	10.6	0.7663
AT3G22530			unknown protein		Lus10000009 [exp]	12.0	0.7648
AT1G69740		HEMB1	Aldolase superfamily protein (...		Lus10029675 [exp]	14.7	0.7424
AT5G66550			Maf-like protein (.1)		Lus10040204 [exp]	15.0	0.7861
					Lus10027391 [exp]	15.0	0.7836
AT1G27170			transmembrane receptors;ATP bi...		Lus10011241 [exp]	20.8	0.7154
					Lus10042563 [exp]	22.7	0.7756
					Lus10029627 [exp]	22.7	0.7755

Compare expression of checked genes

Lus10031459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.