Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42940 157 / 3e-48 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G45430 155 / 1e-46 AT-hook AHL22 AT-hook motif nuclear-localized protein 22 (.1) AT4G12050 149 / 5e-44 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G35270 147 / 5e-44 AT-hook GIK, 2-ATH, AHL21 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) AT4G22810 148 / 8e-44 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G17800 144 / 7e-43 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G14465 138 / 2e-40 AT-hook AHL20 AT-hook motif nuclear-localized protein 20 (.1) AT3G60870 132 / 2e-38 AT-hook AHL18 AT-hook motif nuclear-localized protein 18 (.1) AT3G04570 132 / 5e-38 AT-hook AHL19 AT-hook motif nuclear-localized protein 19 (.1) AT1G76500 132 / 6e-38 AT-hook SOB3, AHL29 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031458 [exp] 222 / 1e-74 AT2G42940 212 / 1e-69 Predicted AT-hook DNA-binding family protein (.1) Lus10020763 [exp] 181 / 2e-57 AT2G42940 294 / 1e-100 Predicted AT-hook DNA-binding family protein (.1) Lus10006577 [exp] 143 / 4e-42 AT3G04570 270 / 1e-89 AT-hook motif nuclear-localized protein 19 (.1) Lus10000519 [exp] 136 / 2e-39 AT2G35270 205 / 1e-64 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) Lus10009301 [exp] 135 / 3e-39 AT3G60870 223 / 4e-72 AT-hook motif nuclear-localized protein 18 (.1) Lus10015862 [exp] 135 / 3e-39 AT3G60870 227 / 1e-73 AT-hook motif nuclear-localized protein 18 (.1) Lus10042551 [exp] 134 / 6e-39 AT3G04570 202 / 4e-64 AT-hook motif nuclear-localized protein 19 (.1) Lus10002711 [exp] 134 / 2e-38 AT4G14465 211 / 1e-66 AT-hook motif nuclear-localized protein 20 (.1) Lus10022010 [exp] 122 / 1e-34 AT4G14465 198 / 7e-63 AT-hook motif nuclear-localized protein 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059400 [exp] 171 / 2e-53 AT2G42940 311 / 2e-107 Predicted AT-hook DNA-binding family protein (.1) Potri.005G202700 [exp] 169 / 7e-53 AT2G42940 305 / 3e-105 Predicted AT-hook DNA-binding family protein (.1) Potri.003G116900 [exp] 159 / 1e-48 AT4G22810 258 / 5e-85 Predicted AT-hook DNA-binding family protein (.1) Potri.001G115200 [exp] 159 / 3e-48 AT4G22810 254 / 1e-83 Predicted AT-hook DNA-binding family protein (.1) Potri.002G149300 [exp] 155 / 5e-47 AT2G45430 226 / 1e-72 AT-hook motif nuclear-localized protein 22 (.1) Potri.010G074201 [exp] 154 / 1e-46 AT4G14465 256 / 3e-85 AT-hook motif nuclear-localized protein 20 (.1) Potri.013G044500 [exp] 153 / 3e-46 AT4G14465 162 / 3e-48 AT-hook motif nuclear-localized protein 20 (.1) Potri.014G070800 [exp] 150 / 4e-45 AT2G45430 222 / 5e-71 AT-hook motif nuclear-localized protein 22 (.1) Potri.001G142800 [exp] 149 / 2e-44 AT4G17800 300 / 6e-102 Predicted AT-hook DNA-binding family protein (.1) Potri.005G257200 [exp] 146 / 2e-43 AT1G76500 192 / 2e-59 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10031460 pacid=23155802 polypeptide=Lus10031460 locus=Lus10031460.g ID=Lus10031460.BGIv1.0 annot-version=v1.0 ATGGGTGGATGCGCCGATCGAAACAACACTCCTGCAGTCAGGCGGCCGCGAGGGAGGCCAGCCGGCTCGAAAAACAAGCCGAAGCCACCGATCTTCGTCA CTCGAGACAGCGCCAACGCCCTCCGCGCCCAAGCACTGGAGGTGAGCTCCGGGTGCGATGTGAGCGAGAGTTTAGCGAGCTACGCGAGGAGGAAGCAGCG CGGGATGTGCGTTCTCAGCGGGAGTGGACAAGTTACGAATGTGAAACTGAGGCAACCTGGAGGAGGAGGCAATGTGGTGACCACCCTCCACGGCAGGTTC GAGATTCTTTCGTTGCTCGGATCGATCTTGCCCCCTCCAGCTGCGCCTTCGGGGATTACCGGGCTGACTATCTACCTGGCGGGAGGTCAGGGGCAGGTAG TTGGTGGATGTGTGGTCGGGAAGCTGATTGCTTCCGGTCCTGTCGTGGTGATGGCTGCTTCGTTCGCCAAAGCGAGTTTCGATCGGTTGCCTCTCGACGA GGAGGAAGATGTTTGTGATGTTAATGGTTACAACCTCTCAGGCTGA
AA sequence Show only first row Show all	>Lus10031460 pacid=23155802 polypeptide=Lus10031460 locus=Lus10031460.g ID=Lus10031460.BGIv1.0 annot-version=v1.0 MGGCADRNNTPAVRRPRGRPAGSKNKPKPPIFVTRDSANALRAQALEVSSGCDVSESLASYARRKQRGMCVLSGSGQVTNVKLRQPGGGGNVVTTLHGRF EILSLLGSILPPPAAPSGITGLTIYLAGGQGQVVGGCVVGKLIASGPVVVMAASFAKASFDRLPLDEEEDVCDVNGYNLSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10031460 [exp]	0	1
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10000947 [exp]	6.3	0.8344
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Lus10027321 [exp]	7.3	0.8545
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10042328 [exp]	9.3	0.8668
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10010660 [exp]	14.0	0.8263
AT3G06760			Drought-responsive family prot...		Lus10013420 [exp]	19.8	0.8393
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004559 [exp]	20.1	0.8629
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10033969 [exp]	24.7	0.8428
AT1G56140			Leucine-rich repeat transmembr...		Lus10010927 [exp]	25.1	0.8083
AT2G37480			unknown protein		Lus10025314 [exp]	28.3	0.8431
AT1G72175			RING/U-box protein with domain...		Lus10009529 [exp]	31.4	0.8034

Compare expression of checked genes

Lus10031460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.