Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015218 [exp] 497 / 4e-174 ND / Lus10005187 [exp] 141 / 1e-37 ND / Lus10005188 [exp] 131 / 5e-34 ND / Lus10031397 [exp] 108 / 7e-29 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031461 pacid=23156049 polypeptide=Lus10031461 locus=Lus10031461.g ID=Lus10031461.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCTTTCGCCATGCCCGCCGCTGCTACTTTCTCGTCGGTGGCATCATCGCCACCGCAACACACCAAAAAGAATATGACGACGGTGCTTACTG CTAGCCCCAAAACTAGGTCAAAGGTGTCGGTTTCTGCTGCTGTTGTCTCCTTCAACAAGCAGCAGGACGGAGGTATTCCACGCACCTACTTCGCCAAGCA GACTGACGGAGGTCTTTTGAAAGACTACTTCGCCAAGAAACATGACGGAGGTATTCGACGCACCTACTTTGCCAAGCAGTATGATGGAGGTCTTTTGAAA GACTACTTCGCCAAGGAATATGACGGAGGTGAATGGGCTGCCTTCTTCGGCAAACAGCATGACGGGGGTATTCGACGCACCTACTTCACCAAGGAACATG ACGGAGGTGAATGGGCTGCCTTCTTCGGCAAACAGCATGACGGGGGTATTCGACGCACCTACTTCACCAAGGAACATGACGGAGGTGAATGGGCTGCCTT CTTCGGCAAACAGCAGGACGAAGGTATCCGTCGCACCTACTTCGCCAAGCAACATGACAGAGGTCTTTTGCGAGATTATTTTGCCAAGCAAGAAGACGGA GGTCTTTTACGAGACTATTTCGCCAAGGAACAGGACGGAGGTCTCTTACGGGACTACTTCGCGAAGGACGAAGGTCTCTTGCGAGACTACTTCGCGATGG ACGGAGGACTTTTGCGAGACTACTTCGCCAAGGAACAGGATGGAGGTCTCTTGCGAGACTACTTCGCCAAGGAACAGGACGGAGGTCTCAGACAAGGCTA CTTTGGCAAGCAACATGACAGAGGTCTCAGACAAGGCTACTTCGGCAAGGAACAGGACGGAGGTCTTAGACAAGGCTACTTCGGCAAGCAACAGGACGAA GGTCTCCGACAAGGCTACTTCGGCAAACAACAGGACGGAGGTCTCAGACAAGACTACTTCAGCAAGCAACAGGACGGAGGTCTCAGACAAGGCTACTTCG GTAAGCAACAAGACGGAGGTCTCAGGCAAGACTACTTCGCCAAAGACGGAGGTCTCAGGCAAGACTACTTCGCCAAGGACGGAGGTCTCAGGCAAGACTA CTTCGCCAAGGACGGAGGTCTCTTGGGAGACTACTTCGCCAAAAAACAAGACGGAGGTCTCTTGGGAGATTACTTCGCCAAGGAGCAGGACGGTGGGATG ATAGTATCTTCGCCGATGTTCATGCTTGTCGGCAAGAATCAAGATGAAATACCCTCTAACTGA
AA sequence Show only first row Show all	>Lus10031461 pacid=23156049 polypeptide=Lus10031461 locus=Lus10031461.g ID=Lus10031461.BGIv1.0 annot-version=v1.0 MASSFAMPAAATFSSVASSPPQHTKKNMTTVLTASPKTRSKVSVSAAVVSFNKQQDGGIPRTYFAKQTDGGLLKDYFAKKHDGGIRRTYFAKQYDGGLLK DYFAKEYDGGEWAAFFGKQHDGGIRRTYFTKEHDGGEWAAFFGKQHDGGIRRTYFTKEHDGGEWAAFFGKQQDEGIRRTYFAKQHDRGLLRDYFAKQEDG GLLRDYFAKEQDGGLLRDYFAKDEGLLRDYFAMDGGLLRDYFAKEQDGGLLRDYFAKEQDGGLRQGYFGKQHDRGLRQGYFGKEQDGGLRQGYFGKQQDE GLRQGYFGKQQDGGLRQDYFSKQQDGGLRQGYFGKQQDGGLRQDYFAKDGGLRQDYFAKDGGLRQDYFAKDGGLLGDYFAKKQDGGLLGDYFAKEQDGGM IVSSPMFMLVGKNQDEIPSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10031461 [exp]	0	1
AT2G43570		CHI	"chitinase, putative", chitina...		Lus10001773 [exp]	16.5	0.8381
AT1G78760			F-box/RNI-like superfamily pro...		Lus10006714 [exp]	27.4	0.8170
AT5G27930			Protein phosphatase 2C family ...		Lus10031475 [exp]	33.3	0.8157
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028614 [exp]	38.2	0.7366
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10018764 [exp]	47.9	0.7806
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10039413 [exp]	133.1	0.6978
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10008622 [exp]	194.5	0.7182
AT2G16750			Protein kinase protein with ad...		Lus10025103 [exp]	213.2	0.7416
AT3G61260			Remorin family protein (.1)		Lus10027460 [exp]	287.2	0.6882

Compare expression of checked genes

Lus10031461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.