Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42900 131 / 8e-37 Plant basic secretory protein (BSP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019805 [exp] 42 / 0.0003 AT2G15220 213 / 8e-70 Plant basic secretory protein (BSP) family protein (.1) Lus10013863 [exp] 40 / 0.0007 AT2G15220 224 / 9e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10026579 [exp] 40 / 0.001 AT2G15220 226 / 1e-74 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G202300 [exp] 155 / 1e-45 AT2G42900 134 / 2e-37 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10031462 pacid=23156060 polypeptide=Lus10031462 locus=Lus10031462.g ID=Lus10031462.BGIv1.0 annot-version=v1.0 ATGTCCAACCAACACACCACTTCCCTCCGCCGCCCACTTCTTCCTTCTTCCGCCGTCTCCTCCTCCTCCCAAACCGCCGGCGACATCTTCCGCCGCCTCC TCTTCATCATCTCTATCGGATTTCTGTCCCTGTGGGCCAACCACCAAGCATCCAAAGGCTTCCAACTCCACATCCTCAACGACCCCGCCGTCGCCGATTC CTCCGCCGGGAAACGCTTCTCCCTCTTCTACATCTCCAACGGCCGAGCCGCCTCAATCCTCCTCAACGCCAGCAATTTCGTCGAGCACTTGCTCTACTCC GGCCAAAATCATGATCATCAGAAGCCAGCAATCCGCCGTGTCACCCTCCGCCTCGCCGCCGACAACTCGACCGGAACCGACGTGTCGACCGCCGAGACCT TCCCCGGCGAGTTCATCATACGATTGAGTCCGTCGCTTCTGATGTCAGGGCTCGCCAGAAACAGAGTCGACGTCGACTCTGTAGTCAAATCTGCCGTCTT GCGCGGGATGGCCTTTGTTTGGCTGTGGGACGGCGGGGACTCGTCGAGAGCTCCGTCTTGGGTGATCGAAGCTGCTGTTGAGTGCGTAAACAGGATTGGT GGGTTCGGCGGCGGTAGTACAACGGATGACAGGGTGGTTGTGCGGGGGTTAATGGAGTACTGTGAACGGCGGAAAGAAGGGTTCCTTCGGCGGCTGAATC TGACGACGGTGGAAAGAGCGGCGGCGATGCCGGTGGAGAAATTGTGTATATCTTATAAGAAATGTGGATCGTCCGCCGATGTTGATTTGTGA
AA sequence Show only first row Show all	>Lus10031462 pacid=23156060 polypeptide=Lus10031462 locus=Lus10031462.g ID=Lus10031462.BGIv1.0 annot-version=v1.0 MSNQHTTSLRRPLLPSSAVSSSSQTAGDIFRRLLFIISIGFLSLWANHQASKGFQLHILNDPAVADSSAGKRFSLFYISNGRAASILLNASNFVEHLLYS GQNHDHQKPAIRRVTLRLAADNSTGTDVSTAETFPGEFIIRLSPSLLMSGLARNRVDVDSVVKSAVLRGMAFVWLWDGGDSSRAPSWVIEAAVECVNRIG GFGGGSTTDDRVVVRGLMEYCERRKEGFLRRLNLTTVERAAAMPVEKLCISYKKCGSSADVDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42900			Plant basic secretory protein ...		Lus10031462 [exp]	0	1
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039414 [exp]	1.0	0.9140
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10033643 [exp]	4.9	0.8197
AT2G37050			Leucine-rich repeat protein ki...		Lus10023166 [exp]	7.9	0.8429
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	8.9	0.8734
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10004509 [exp]	9.2	0.8139
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Lus10034429 [exp]	10.1	0.8723
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	13.2	0.8653
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10039565 [exp]	13.4	0.8412
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030904 [exp]	13.9	0.8620
					Lus10043467 [exp]	17.6	0.8098

Compare expression of checked genes

Lus10031462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.