Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32360 659 / 0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT5G53460 64 / 2e-10 GLT1 NADH-dependent glutamate synthase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015217 [exp] 932 / 0 AT4G32360 661 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Lus10000390 [exp] 61 / 1e-09 AT5G53460 3795 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Lus10019020 [exp] 45 / 0.0001 AT5G53460 1280 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G118801 [exp] 690 / 0 AT4G32360 666 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Potri.012G011700 [exp] 66 / 6e-11 AT5G53460 3649 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Potri.015G017500 [exp] 60 / 3e-09 AT5G53460 3665 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10031463 pacid=23155952 polypeptide=Lus10031463 locus=Lus10031463.g ID=Lus10031463.BGIv1.0 annot-version=v1.0 ATGGCGATGTTAGGAGCAAGAACATGGGTTTCCAGAAGTCTCACAACTCTTCTTCCTTCTAATCATCTTCGCGTCTGTGTGGTCGGCAGTGGACCTGCCG GCATGTACACCGCCGAGAAAATGCTGAAGGCGCACCGAGGAGCAGAAGTTGACATCATCGATCGATTGCCCACGCCTTTTGGATTAGTGCGGTCTGGAGT TGCCCCTGATCATCCTGAAACCAAGATTGTGACGAATCAGTTCTCGAGGGTGGTGACACAAAACGAAAGATGCTCGTTTTTCGGCAATGTAGCTCTTGGA TCTTCTGTCTCGCTCTCCGAGCTTCGTGGCTTGTATGATGTGGTTGTTCTTGCATATGGTGCTGAAAGCGACAGAGATTTAGGCATTCCTGGAGAGGATC TGGCAGGGATATACTCAGCCAGAGAATTCGTTTGGTGGTATAACGGGCATCCTGATTGCAGAAACTTGAGTCCTGATTTGAACAATACTGATACAGCTGT TATACTTGGACAGGGAAACGTAGCTCTCGATGTTGCTCGAGTCCTTCTAAGGCCAACAGCGGAGTTGGCAACAACTGACATTGCCAGCCATGCTTTGGCC GCTTTAGAACAAAGCTCCATAAGAAAAGTCTATTTGGTTGGAAGACGTGGACCAGCTCAAGCCGCTTGCACTGCCAAAGAACTACGAGAAATTCTAGGAA CAAAAAACTTGCATATTCACATAAAGGAAGAAGATTTATGCAAAAGCTCGGAAGACGAGGAGGAACTGAAGAATAACCGTATCAGAAGGAGGGTTTACGA GTTGCTTTCGAAAGCTGCCAGCACTGGACATGCCCTTCCTAGTTCGGATCAACGCGAACTGCACTTTTTGTTCTTGCGAAAGCCGGATGGTTTCTCCGAG TCAACCGACTTGCCAGGGCATGTTTCCAGCGTAAACTTCGAGAAGACGGTTCTCAAAGGTGTTGGCTCCGGAAACCAGATTGCGGTTGGCAGTGGGCAGT TTGAGGACCTCGAGTGCGGGATGGTTTTGAAGAGCATTGGTTACAAATCCGTGCCTGTTCCCGGTTTACCATTCGATCATCGAAAAGGGATAGTACCCAA TGCAGGGGGACGGGTTATTAGCGTTACCTGCGAAGATCCCGATACCAAAATCGAGAATGGTTTATACGTATGTGGGTGGCTGAAGAGAGGACCGACTGGC ATCATCGGAACAAACCTACACTGTGCAGAAGAAACCGTTGCAAGCATATCGCACGACCTTGAACACGGCTTGATAGGGTCACCATCAAAGAAGCCGGGCA GGGAAGGGCTCGTCGAGTTACTAGACGGTAGGAATGTGAGAGTTGTGGACTTCAACGGTTGGGAAATGATAGACTGTGAAGAGAGGAAGCTTGGGTGTGA GAGGAACAAGTCCAGGGAGAAGTTATGCAGCTGGAAGGATTTATTGGCAGTTGCAAAAACCGAGTAA
AA sequence Show only first row Show all	>Lus10031463 pacid=23155952 polypeptide=Lus10031463 locus=Lus10031463.g ID=Lus10031463.BGIv1.0 annot-version=v1.0 MAMLGARTWVSRSLTTLLPSNHLRVCVVGSGPAGMYTAEKMLKAHRGAEVDIIDRLPTPFGLVRSGVAPDHPETKIVTNQFSRVVTQNERCSFFGNVALG SSVSLSELRGLYDVVVLAYGAESDRDLGIPGEDLAGIYSAREFVWWYNGHPDCRNLSPDLNNTDTAVILGQGNVALDVARVLLRPTAELATTDIASHALA ALEQSSIRKVYLVGRRGPAQAACTAKELREILGTKNLHIHIKEEDLCKSSEDEEELKNNRIRRRVYELLSKAASTGHALPSSDQRELHFLFLRKPDGFSE STDLPGHVSSVNFEKTVLKGVGSGNQIAVGSGQFEDLECGMVLKSIGYKSVPVPGLPFDHRKGIVPNAGGRVISVTCEDPDTKIENGLYVCGWLKRGPTG IIGTNLHCAEETVASISHDLEHGLIGSPSKKPGREGLVELLDGRNVRVVDFNGWEMIDCEERKLGCERNKSREKLCSWKDLLAVAKTE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32360			Pyridine nucleotide-disulphide...		Lus10031463 [exp]	0	1
AT1G15420			unknown protein		Lus10007894 [exp]	10.8	0.8207
AT3G27340			unknown protein		Lus10014875 [exp]	12.5	0.7391
AT1G09300			Metallopeptidase M24 family pr...		Lus10010905 [exp]	23.1	0.8113
AT5G44180	HD		Homeodomain-like transcription...		Lus10017688 [exp]	24.0	0.7982
AT4G14420			HR-like lesion-inducing protei...		Lus10021877 [exp]	24.3	0.8030
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10005840 [exp]	25.3	0.8013
AT4G22760			Tetratricopeptide repeat (TPR)...		Lus10028907 [exp]	31.9	0.7066
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10009017 [exp]	32.5	0.7739
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10031432 [exp]	32.5	0.7686
AT5G61970			signal recognition particle-re...		Lus10043202 [exp]	39.0	0.7864

Compare expression of checked genes

Lus10031463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.