Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26940 251 / 4e-82 DPD1 defective in pollen organelle DNA degradation1, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015216 [exp] 605 / 0 AT5G26940 251 / 6e-82 defective in pollen organelle DNA degradation1, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G020600 [exp] 333 / 1e-113 AT5G26940 291 / 2e-97 defective in pollen organelle DNA degradation1, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10031465 pacid=23156003 polypeptide=Lus10031465 locus=Lus10031465.g ID=Lus10031465.BGIv1.0 annot-version=v1.0 ATGTGCTTCTCTATACTGCAAGCCCCTCGGTGTGGGATCCTGGCCTTAACGAGTCTCTGGCAGGAAAGCTTCCACCGATCTGACAGGACAACATCGGGAA GCCATAGGAGGTTCACTTCCATCGGTTCGAAACATAATGCACTTACCGAAGGAGGATACAGTAGAAGATGGATTAGAAGCAAACCGGCTGAAGACAAAAA GACGGTAGAAAAACTAGATATTACAACCGCCACCAGGCACCAAATACTTGACGAAGAAGAAACTGTTTCGTTGAGCGTAAACAAGGTTATACCATTCGGG CCTTGTGATATAAGACAGCAGCTTGCTGAGAGTAAAGACCTGGCCAAGCTATTGACTGTGCTAGTCTTTGATCTCGAGACTACCGGGTTCAGCAGGACGA CCGAGAGGATTGTAGAGATCGCGTTTCAGGACCTGGGAGGAGGCGAAAAAAGCACGTTCGAAACTCTCGTGAATCCCGAACGCTTCATTTCTAACTCGCA TATCCATGGCATTAGCAACGACATGGTCACCCGGCCTGGTGTTCCTAGGATGAGAGAGTTGATACCGATCCTGCTGAAGTTTGTCGAAAGCCGAAGGAAA CCGGATGGCTATGTGCTCATGGTAGCTCACAACGGTCGAACATTCGACGTTCCCTTCCTCAAAACCGAATTCGAACGATGCAATGTTGAATTTCCTTCAA GTTGGCTTTTCTATTGTACGCTCCCTCTAGCTCGCCAAGCATTGAAGTTAGAAGATTCAAAGCCAAAGATATCTCTGGAAGCTCTCAAGCAAAGGTACAA GATCGTGGCAGAAGGAAAAGCACACAGAGCCATGGCAGATGTCAAAGCACTGTCGTTGATCCTCCAGAGACTGACTTTCGAGCTGAAAATTCCGCTTTCG GGGCTGGTCGAAGGCTCCTTCACGGCTTCGGAGCTGGGCAAGTCGAGCTCAAAGAAGGAGAAACCGGGCAGTAAGCTCAAGAACTCCAAGTAG
AA sequence Show only first row Show all	>Lus10031465 pacid=23156003 polypeptide=Lus10031465 locus=Lus10031465.g ID=Lus10031465.BGIv1.0 annot-version=v1.0 MCFSILQAPRCGILALTSLWQESFHRSDRTTSGSHRRFTSIGSKHNALTEGGYSRRWIRSKPAEDKKTVEKLDITTATRHQILDEEETVSLSVNKVIPFG PCDIRQQLAESKDLAKLLTVLVFDLETTGFSRTTERIVEIAFQDLGGGEKSTFETLVNPERFISNSHIHGISNDMVTRPGVPRMRELIPILLKFVESRRK PDGYVLMVAHNGRTFDVPFLKTEFERCNVEFPSSWLFYCTLPLARQALKLEDSKPKISLEALKQRYKIVAEGKAHRAMADVKALSLILQRLTFELKIPLS GLVEGSFTASELGKSSSKKEKPGSKLKNSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26940		DPD1	defective in pollen organelle ...		Lus10031465 [exp]	0	1
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10020391 [exp]	12.5	0.7206
AT1G54385			ARM repeat superfamily protein...		Lus10007428 [exp]	17.3	0.7434
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10008580 [exp]	18.8	0.7162
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10003657 [exp]	30.7	0.6622
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10021535 [exp]	63.2	0.6385
AT1G14780			MAC/Perforin domain-containing...		Lus10034586 [exp]	96.9	0.6186
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10026480 [exp]	123.3	0.5810
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Lus10025613 [exp]	160.5	0.6077
AT1G78520			Carbohydrate-binding X8 domain...		Lus10042492 [exp]	222.2	0.5794
AT1G10700		PRS3	phosphoribosyl pyrophosphate (...		Lus10006202 [exp]	223.9	0.5749

Compare expression of checked genes

Lus10031465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.