Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26980 481 / 2e-172 ATSYP41, ATTLG2A, SYP41 syntaxin of plants 41 (.1.2) AT3G05710 472 / 1e-168 ATSYP43, SYP43 syntaxin of plants 43 (.1.2) AT4G02195 417 / 8e-147 ATTLG2B, ATSYP42, SYP42 syntaxin of plants 42 (.1) AT5G46860 50 / 6e-07 SGR3, ATVAM3, ATSYP22, VAM3 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) AT5G16830 45 / 5e-05 ATSYP21, ATPEP12, SYP21, PEP12P syntaxin of plants 21 (.1) AT3G52400 42 / 0.0005 ATSYP122, SYP122 syntaxin of plants 122 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029864 [exp] 544 / 0 AT3G05710 510 / 0.0 syntaxin of plants 43 (.1.2) Lus10020683 [exp] 401 / 4e-141 AT3G05710 361 / 7e-126 syntaxin of plants 43 (.1.2) Lus10015215 [exp] 247 / 2e-81 AT3G05710 223 / 3e-72 syntaxin of plants 43 (.1.2) Lus10000311 [exp] 54 / 9e-09 AT5G46860 217 / 5e-72 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10030953 [exp] 53 / 1e-07 AT5G46860 417 / 9e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10040094 [exp] 52 / 2e-07 AT5G46860 419 / 1e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10011064 [exp] 52 / 4e-07 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10042527 [exp] 47 / 9e-06 AT1G08560 391 / 2e-137 KNOLLE, syntaxin of plants 111 (.1) Lus10021988 [exp] 47 / 1e-05 AT1G08560 388 / 2e-136 KNOLLE, syntaxin of plants 111 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G020800 [exp] 516 / 0 AT3G05710 462 / 1e-164 syntaxin of plants 43 (.1.2) Potri.013G011100 [exp] 505 / 0 AT3G05710 457 / 7e-163 syntaxin of plants 43 (.1.2) Potri.002G200400 [exp] 417 / 7e-147 AT5G26980 397 / 1e-139 syntaxin of plants 41 (.1.2) Potri.001G138500 [exp] 48 / 3e-06 AT5G46860 377 / 3e-133 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.003G095300 [exp] 48 / 5e-06 AT5G46860 368 / 2e-129 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.019G030800 [exp] 46 / 2e-05 AT1G08560 431 / 3e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.013G053200 [exp] 45 / 5e-05 AT1G08560 430 / 8e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.014G145200 [exp] 44 / 8e-05 AT5G46860 263 / 4e-88 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.016G068600 [exp] 41 / 0.001 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10031466 pacid=23155842 polypeptide=Lus10031466 locus=Lus10031466.g ID=Lus10031466.BGIv1.0 annot-version=v1.0 ATGGCGACGAGGAACCGGACGTTGATATTCAAGAAGTACAGAAACGCGTTGAAAAGCGTACGGATTCCGACGAGCTCCTCTGCCTCCGCGGCTTCGACGA GCTCTTCTGCCGGAGGAGGTGGTCCGGTGATTGAGTTGGTTAGCACTTCGCTTCTCAACCATAAACGTTCTTACGCTCCTCTCAGTACTGAAGATCCTGG AATTTCCAGTAAAGGAGCAGTAACAGTCGGTCTCCCACCTGCCTGGGTCGACATTTCGGAGGACATAGCAACCAATGTGCAACGTGCAAGGACAAAGATG GCGGAGCTAGCCAAGGCTCATGCTAAAGCGTTGATGCCTTCATTTGGAGATGGTAAAGAAGACCAATATACGATTGAGACCTTAACCCACGAGATAACGG GTCTTATAAAGAAATCGGAGAAGAAGCTACAGAGGCTTTCTGCTGGGGGGCCTGCTGAAGATTCAAATGTTAGGAAAAATGTGCAGAGATCCCTGGCCAC TGACCTCCAGAACCTTTCAATGGAGCTTCGCAAGAAACAATCAACTTACTTGAAGCGCCTCAGGCAGCAAAAAGAGGGTCAAGAAGGGGATGACTTGGAG ATGAACCTTAACGGCAATAGATCCCGAATGGACGATGAAGATGGTTTAGACGACATGATGTTTAACGAGCTTCAAACAGCCAGAGTTAAAAAGACCGAAG CATTCACTGCAGAAAGGGAGAGAGAGATTCAACAGGCAAGTGCAAATTCTATTTTCCAGGTCGTGGAGTCTGTAAATGAACTTGCTCAAATCATGAAGGA CTTGTCAGTACTTGTGATAGACCAGGGTACGATCGTCGATAGAATAGACTACAACGTTCAGAACGTCGCAACTACAGTCGAAGACGGGCTTAAACAGCTG CAGAAGGCCGAAAGATCGCAAAAGCAAGGCGGAATGGTAATGTGTGCGACGGTGCTTGTGATCATGTGCTTCATCATGTTGGTTCTTCTGATCCTCAAGG AGATATTGTTCTGA
AA sequence Show only first row Show all	>Lus10031466 pacid=23155842 polypeptide=Lus10031466 locus=Lus10031466.g ID=Lus10031466.BGIv1.0 annot-version=v1.0 MATRNRTLIFKKYRNALKSVRIPTSSSASAASTSSSAGGGGPVIELVSTSLLNHKRSYAPLSTEDPGISSKGAVTVGLPPAWVDISEDIATNVQRARTKM AELAKAHAKALMPSFGDGKEDQYTIETLTHEITGLIKKSEKKLQRLSAGGPAEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQEGDDLE MNLNGNRSRMDDEDGLDDMMFNELQTARVKKTEAFTAEREREIQQASANSIFQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNVQNVATTVEDGLKQL QKAERSQKQGGMVMCATVLVIMCFIMLVLLILKEILF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10031466 [exp]	0	1
AT1G12450			SNARE associated Golgi protein...		Lus10028900 [exp]	7.7	0.7528
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10020351 [exp]	15.7	0.7432
AT1G67960		POD1	POLLEN DEFECTIVE IN GUIDANCE 1...		Lus10015372 [exp]	17.0	0.7118
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10009531 [exp]	23.6	0.7187
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Lus10040144 [exp]	27.5	0.6523
AT1G64610			Transducin/WD40 repeat-like su...		Lus10003206 [exp]	32.6	0.7012
AT5G19390			Rho GTPase activation protein ...		Lus10036047 [exp]	36.8	0.7033
AT5G06560			Protein of unknown function, D...		Lus10012288 [exp]	46.9	0.6944
AT4G24530			O-fucosyltransferase family pr...		Lus10015890 [exp]	59.1	0.6899
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10009770 [exp]	62.9	0.6838

Compare expression of checked genes

Lus10031466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.