Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26990 218 / 1e-71 Drought-responsive family protein (.1) AT3G05700 214 / 4e-70 Drought-responsive family protein (.1) AT1G56280 165 / 2e-51 ATDI19 drought-induced 19 (.1.2) AT3G06760 151 / 2e-45 Drought-responsive family protein (.1.2) AT5G49230 141 / 8e-42 HRB1 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) AT1G02750 103 / 4e-27 Drought-responsive family protein (.1.2) AT4G02200 100 / 9e-26 Drought-responsive family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015214 [exp] 305 / 3e-106 AT5G26990 194 / 5e-63 Drought-responsive family protein (.1) Lus10037819 [exp] 147 / 4e-44 AT5G49230 198 / 3e-64 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Lus10001462 [exp] 127 / 5e-36 AT3G05700 124 / 5e-35 Drought-responsive family protein (.1) Lus10010305 [exp] 125 / 3e-35 AT3G06760 108 / 5e-29 Drought-responsive family protein (.1.2) Lus10013420 [exp] 123 / 1e-34 AT3G06760 124 / 3e-35 Drought-responsive family protein (.1.2) Lus10002441 [exp] 102 / 1e-27 AT5G26990 95 / 3e-25 Drought-responsive family protein (.1) Lus10017097 [exp] 92 / 6e-23 AT5G49230 131 / 2e-38 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Lus10015412 [exp] 92 / 2e-22 AT5G26990 123 / 1e-34 Drought-responsive family protein (.1) Lus10037717 [exp] 86 / 7e-19 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G011200 [exp] 302 / 6e-105 AT3G05700 250 / 1e-84 Drought-responsive family protein (.1) Potri.005G020900 [exp] 289 / 6e-100 AT3G05700 224 / 3e-74 Drought-responsive family protein (.1) Potri.010G000800 [exp] 190 / 6e-61 AT5G49230 190 / 5e-61 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.008G213400 [exp] 177 / 1e-55 AT5G49230 196 / 2e-63 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.014G125500 [exp] 129 / 1e-36 AT3G05700 148 / 2e-44 Drought-responsive family protein (.1) Potri.002G200500 [exp] 125 / 2e-35 AT3G05700 152 / 7e-46 Drought-responsive family protein (.1) Potri.011G057200 [exp] 109 / 2e-29 AT3G06760 110 / 2e-29 Drought-responsive family protein (.1.2) Potri.019G027300 [exp] 100 / 7e-27 AT5G49230 123 / 1e-36 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.012G086500 [exp] 82 / 5e-19 AT1G56280 92 / 6e-23 drought-induced 19 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF05605 [flax] [poplar] zf-Di19 Drought induced 19 protein (Di19), zinc-binding
Representative CDS sequence Show only first row Show all	>Lus10031467 pacid=23155841 polypeptide=Lus10031467 locus=Lus10031467.g ID=Lus10031467.BGIv1.0 annot-version=v1.0 ATGGATGGTGATTCGTGGAGCGCTCGTCTCTCTTCTGCTTCCAAGAGATACCAATCAGCTCTACAATCCCGATCTGATATGTTCATGGGATTTGAAGAAA TCGACGTTGATGATGACATGAGGGAGGAGTTCCCGTGCCCTTTTTGTTCGGACTACTTCGATATAGTCGGGTTGTGTTGTCACATAGATGATGAACATCC TGTGGAAGCGAAGAACGGGGTCTGTCCGGTTTGTGCAATGAGGGTGGGGGTCGATATGGTCGCCCACATAACCTTACAACATGGGAATATCTTCAAGATA TCCTTTTTCTCTCGAGTTATTCCAGTTGATCGCAAGAGGAAATCACGTAGAGGACATTCGAGCCTTTCCTTGTTGCGGAAAGAATTACGAGAAGGAAATC TGCAGTCCCTTTTCGGGTCGTCGTGTATAGTTTCGTCTTCCTCTTCTTCAAACACTGCTCCCGACCCCTTGTTGTCGTCCTTCATCTTACCAATGGGAGA CGATTTCGCCAACCCTCACCCGTCTTTGTCGACCGACACAAGTTCAGCCAAGAAAGGAGGTGCCACAGCAGAGAGTGTTTCAGAAAGAAATACGACGAAG TCACCTCCATTGTCTGTCAAGGATAAGGAGGAGAAAGCGAGAAGGAGCGAGTTCGTTCAAGGGATGTTATTGTCCACCATTTTTGGCGATGTTTCATAA
AA sequence Show only first row Show all	>Lus10031467 pacid=23155841 polypeptide=Lus10031467 locus=Lus10031467.g ID=Lus10031467.BGIv1.0 annot-version=v1.0 MDGDSWSARLSSASKRYQSALQSRSDMFMGFEEIDVDDDMREEFPCPFCSDYFDIVGLCCHIDDEHPVEAKNGVCPVCAMRVGVDMVAHITLQHGNIFKI SFFSRVIPVDRKRKSRRGHSSLSLLRKELREGNLQSLFGSSCIVSSSSSSNTAPDPLLSSFILPMGDDFANPHPSLSTDTSSAKKGGATAESVSERNTTK SPPLSVKDKEEKARRSEFVQGMLLSTIFGDVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26990			Drought-responsive family prot...		Lus10031467 [exp]	0	1
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10038510 [exp]	3.2	0.9429
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	3.6	0.9441
AT1G03290			unknown protein		Lus10012382 [exp]	3.7	0.9102
AT3G51500			unknown protein		Lus10014816 [exp]	4.1	0.9097
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Lus10009810 [exp]	4.9	0.9127
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10012850 [exp]	5.0	0.9276
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10017097 [exp]	9.4	0.8927
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	9.5	0.9346
AT3G50000		ATCKA2, CKA2	"casein kinase II, alpha chain...		Lus10011534 [exp]	10.1	0.8894
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10022726 [exp]	11.2	0.9219

Compare expression of checked genes

Lus10031467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.