Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05670 315 / 4e-97 RING/U-box protein (.1) AT4G10940 66 / 3e-12 RING/U-box protein (.1) AT1G67180 60 / 2e-09 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) AT3G01460 52 / 9e-07 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT5G58610 49 / 8e-06 PHD finger transcription factor, putative (.1) AT5G53910 47 / 1e-05 RING/U-box superfamily protein (.1) AT5G24330 47 / 3e-05 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT2G39100 45 / 8e-05 RING/U-box superfamily protein (.1) AT5G40250 45 / 0.0001 RING/U-box superfamily protein (.1) AT3G45560 44 / 0.0002 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015213 [exp] 927 / 0 AT3G05670 368 / 2e-112 RING/U-box protein (.1) Lus10000086 [exp] 587 / 0 AT3G05670 162 / 9e-44 RING/U-box protein (.1) Lus10013501 [exp] 79 / 3e-15 AT3G05670 118 / 1e-27 RING/U-box protein (.1) Lus10032402 [exp] 64 / 2e-10 AT4G10930 553 / 3e-179 unknown protein Lus10023068 [exp] 64 / 3e-10 AT4G10930 586 / 0.0 unknown protein Lus10001535 [exp] 53 / 4e-07 AT4G10940 189 / 4e-59 RING/U-box protein (.1) Lus10008796 [exp] 53 / 6e-07 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030625 [exp] 53 / 9e-07 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030864 [exp] 52 / 2e-06 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G011400 [exp] 409 / 2e-133 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.005G021000 [exp] 400 / 2e-130 AT3G05670 436 / 2e-140 RING/U-box protein (.1) Potri.001G089900 [exp] 62 / 1e-09 AT4G10930 506 / 5e-160 unknown protein Potri.004G106000 [exp] 58 / 1e-08 AT1G67180 237 / 3e-72 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) Potri.017G072460 [exp] 53 / 5e-07 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.015G009632 [exp] 50 / 3e-06 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.012G018300 [exp] 49 / 6e-06 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.003G126600 [exp] 49 / 8e-06 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.010G092300 [exp] 48 / 1e-05 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1) Potri.009G072600 [exp] 47 / 6e-05 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10031468 pacid=23156064 polypeptide=Lus10031468 locus=Lus10031468.g ID=Lus10031468.BGIv1.0 annot-version=v1.0 ATGGCAAAGAAGAAGAAGACTAGAAATAAGCGAGGGGCTAGGACGAATTTGGGAGTTGTGAAAAATTCTGCTGCAAAGAAAGGTAGGTTGAGGAAGAAAG TGAAGTATGAAGAAGAAGACGATGATGATGAAGATTTTGTTGACTGCAACTTATCTGCAAGAGAGAAGAGTAAGAAAATGTCAGGTTCATCAAGGAGAAG GAAGTACACAGTAAACTCGGACTCGGATTTCGTGGCATCCGAAGAAGAGCGGGAACAAGTGAAGATTAGTTTGCCTGTGGCAAGGAAGGGCAAAGAGAAA GTGAAGAAATCGGAGTCCAAGGCAGCAGCGAAACAAGTTTGCGGAATCTGTTTTACGGAAGAGGATAAGAGAAGGTTAAGAGGAACACTAGACTGCTGCA ACCATTACTTCTGCTTCAAGTGCATCATGGAGTGGTCGAAGGTCGAGTCTCGTTGCCCCTTGTGCAAGCAAAGGTTGACGACGATCACTAAGAACGGGAG ATTGTCAGGAATGGACATGAGAAGTGTGGTGATCGAAGTACCCAAGCGTGATCAGGTCTATCAACCCACTGAAGAGGAAATCAGAAGCTTCATTGATCCT TATGAGCATGTACGATGCACAGAATGCCATCAAGGTGGAGACGATGCTCATATGTTGCTGTGCGACCTCTGCGATTCTCCGGCTCATACCTACTGCGTTG GTCTTGGTCAACAAGTCCCCCCCGGGAACTGGTATTGCGACGGTTGCAGGCCTGCTGGTTCCTCAAGCTCCCAGAACCAGCAAGACAATATCTCGTCTGA TCAAAGACCGATGCCGGTAAGTAACAGGTTGATCGGGCATACTCCACCACCACCCACTGTGTCCAATTTCGAAGACAGATCGCATCTGATCTCACAATCT TCGACATTCCCTCAAGCGTTCGGGTCTCCGATGACGTCTCAAGGGCTTCCAACAGGAGATTCCTTGACTTTAGGAACCGGTGCACAGACGCTATGGAGCA GGCGTGAGATTCAACGACGTATACAGAATCTTCTATCGAGCAGAATGAATCTGACAGCTGGCGGAGTTGATGGAGTCCAAGTTGCCACGGCTATTCAACG GATACAGAGTCTTCTGTCTAGTGGAATGACTGGTGGAATGGGCGGGATCCGAGCTCCCACCGGTGTTTACAGTGGCTTTCCAGGCGCTCGAATCGCTCAG CACGGAGAAATGCCTGCTCGGAATTCGATCCCTTCTTCTTTAATTGGTAATAATAGGGAATTTTTAGGGTTTACAGCAAACCAATGGAGGCCAGCTCAGC AGGGAGCATCAACTGTAGCAGCAGCCATTGAGAGGCCTGTCAATTTGACCTTATGGCCTGAAAACTCCGGGATTAATCCGGTTCTGGGTAATCTATATAG CAACCGGCCGACCACTAATCGTCTCGGGTTTGATTTATCACCTTATGGTGCTAACAACAACAACAATCAATTATACATCTTGAAGGAACAGCTGCAGTCT ATGATTACTGCCCATTTGAAGGCCTTGTCCCAAGGTATCGAACTAGGGCAAGAGACCATGAACGGAATCGTTAGGGCTTCGATGAACACAGTCATGGCAT ATTGCGGCCTAGAGCACGAGAGAAACGAAGTCCAACCTTTACCGCTGATGCCATCGAGATGCGTCCATGTCGATAGAATCGCTTCCGGACAGGCCAGCAT TTTGAGAGGTTTTTGCTCATCTTGCTTTGAACCATTTGTACATTTTTGGGGGTAA
AA sequence Show only first row Show all	>Lus10031468 pacid=23156064 polypeptide=Lus10031468 locus=Lus10031468.g ID=Lus10031468.BGIv1.0 annot-version=v1.0 MAKKKKTRNKRGARTNLGVVKNSAAKKGRLRKKVKYEEEDDDDEDFVDCNLSAREKSKKMSGSSRRRKYTVNSDSDFVASEEEREQVKISLPVARKGKEK VKKSESKAAAKQVCGICFTEEDKRRLRGTLDCCNHYFCFKCIMEWSKVESRCPLCKQRLTTITKNGRLSGMDMRSVVIEVPKRDQVYQPTEEEIRSFIDP YEHVRCTECHQGGDDAHMLLCDLCDSPAHTYCVGLGQQVPPGNWYCDGCRPAGSSSSQNQQDNISSDQRPMPVSNRLIGHTPPPPTVSNFEDRSHLISQS STFPQAFGSPMTSQGLPTGDSLTLGTGAQTLWSRREIQRRIQNLLSSRMNLTAGGVDGVQVATAIQRIQSLLSSGMTGGMGGIRAPTGVYSGFPGARIAQ HGEMPARNSIPSSLIGNNREFLGFTANQWRPAQQGASTVAAAIERPVNLTLWPENSGINPVLGNLYSNRPTTNRLGFDLSPYGANNNNNQLYILKEQLQS MITAHLKALSQGIELGQETMNGIVRASMNTVMAYCGLEHERNEVQPLPLMPSRCVHVDRIASGQASILRGFCSSCFEPFVHFWG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05670			RING/U-box protein (.1)		Lus10031468 [exp]	0	1
					Lus10010972 [exp]	2.8	0.8897
					Lus10032068 [exp]	4.2	0.8341
AT3G05670			RING/U-box protein (.1)		Lus10000086 [exp]	5.8	0.7747
AT5G41020	MYB		myb family transcription facto...		Lus10024036 [exp]	6.7	0.8312
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10043184 [exp]	8.5	0.7970
					Lus10036528 [exp]	9.5	0.7816
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Lus10038451 [exp]	9.7	0.8159
AT1G16210			unknown protein		Lus10022649 [exp]	11.3	0.8170
AT2G46520			cellular apoptosis susceptibil...		Lus10030433 [exp]	16.0	0.7119
AT1G61040		VIP5	vernalization independence 5, ...		Lus10018476 [exp]	17.0	0.7977

Compare expression of checked genes

Lus10031468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.